View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9558_low_2 (Length: 406)
Name: NF9558_low_2
Description: NF9558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9558_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 402
Target Start/End: Original strand, 12284792 - 12285197
Alignment:
| Q |
4 |
ataatgagagtctaatccttccgttagactcagctgcttcgaagtcgaacatgctat----tctagtacttaggattttgctgttggtttggatataaat |
99 |
Q |
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| T |
12284792 |
ataatgagagtctaatccttctgttagactcaactgcttcgatgtcgaacatgctatatattctagtacttaggattttgctgttggtttggatataaat |
12284891 |
T |
|
| Q |
100 |
a---tttttatataataaccatgttatggtcctatgttatttggttgtatcgttcaaggagtgttggacgaggagaaatgacgacaaaattcagaatctg |
196 |
Q |
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| T |
12284892 |
aatatttttatataataaacatgttatggtcctatgttatttggttgtatcattcaaggagtgttggacgaggagaaatgacgacaaaattcagaatctg |
12284991 |
T |
|
| Q |
197 |
ctgtgccatttattttttgtgttatttggaatccgcatttcctttttgacataatggaatcttagccttttgaaacattnnnnnnncaatgagcatcatg |
296 |
Q |
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| T |
12284992 |
ctgtgccatttattttttgtgttatttggaatccgcatttcctttttgacaaaatggaatcttagccttttgaaacattaaaaaaataatgagcatcaag |
12285091 |
T |
|
| Q |
297 |
ccatgttagaccatctacattggtaaaagcttaatttattttgccttggttattcataagtactattatttggaagaaaaacaaaagggtgcttaaggag |
396 |
Q |
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| T |
12285092 |
ccatgttagaccatctacattggtaaaagcttaatttattttgccttggttattcataagtactattattgggaagaaaaacaaaagggtgcttaaggag |
12285191 |
T |
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| Q |
397 |
aagagt |
402 |
Q |
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|||||| |
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| T |
12285192 |
aagagt |
12285197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 12312948 - 12313340
Alignment:
| Q |
1 |
cacataatgagagtctaatccttccgttagactcagctgcttcgaagtcgaa-catgctattctagtacttaggattttgctgttggtttggatataaat |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12312948 |
cacataatgagagtctaatccttccgttagactcaactgcttcgatgtcgaaacatgctagtctagtacttaggattttgctgttggtttggatataaat |
12313047 |
T |
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| Q |
100 |
atttttatataataaccatgttatggtcctatgttatttggttgtatcgttcaaggagtgttggacgaggagaaatgacgacaaaattcagaatctgctg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12313048 |
atttttatataataaccatgttatggtcctatgttatttggttgtatcattcaagtagtgttggacgaggagaaatgacgacaaaattcagaatctgctg |
12313147 |
T |
|
| Q |
200 |
tgccatttattttttgtgttatttggaatccgcatttcctttttgacataatggaatcttagccttttgaaacattnnnnnnncaatgagcatcatgcca |
299 |
Q |
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| T |
12313148 |
tgccatttattttttgtgttatttggaatccgcatttcctttttgacataatggaatcttagccttttgaaacattaaaaaaacaatgaatatcaagcca |
12313247 |
T |
|
| Q |
300 |
tgttagaccatctacattggtaaaagcttaatttattttgccttggttattcataagtactattatttggaagaaaaacaaaagggtgcttaaggagaag |
399 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12313248 |
tg----------tacattgctaaaagcttaatttattttgccttggttattcataagtactattattgggaagaaaaacaaaagggtgcttaaggagaag |
12313337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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