View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9558_low_3 (Length: 296)
Name: NF9558_low_3
Description: NF9558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9558_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 17880529 - 17880801
Alignment:
| Q |
1 |
ataataaagtagaatagaaattgcagaaaggtgtatactaatgaatggaaaggaaacagaaactcat--aattgacggattccctgccaagagatgtgat |
98 |
Q |
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| T |
17880529 |
ataataaagtagaatagaaattgcagaaaggtgtatactaatgaatggaaaggaaacagaaactcatgaaattgacggattccctgccaagagatgtgat |
17880628 |
T |
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| Q |
99 |
ccttcagagtgcacaaactgcctctaccacaacaagcaaaatacctaaatgaataactcattctttctctcccctaattcttataactaaaacnnnnnnn |
198 |
Q |
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| T |
17880629 |
ccttcagagtgcacaaactgcctctaccacaacaagcaaaatacctaaatgaataactctttcgttctctccgctaattcttataactaaaacaaaaaaa |
17880728 |
T |
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| Q |
199 |
nnntaaccacctctccttcacatcacgctccccacaatcccctcgtcaacttacactcttattcttccatgtagc |
273 |
Q |
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| T |
17880729 |
aa--aaccacctctccttcacatcacgctccccacaatcccctcgtcaacttacactcttattcttccatgtagc |
17880801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 15047681 - 15047803
Alignment:
| Q |
68 |
aattgacggattccctgccaagagatgtgatccttcagagtgcacaaactgcctctaccacaacaagcaaaatacctaaatgaataactcattctttctc |
167 |
Q |
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|||||| ||||||||||| ||| | | || |||||||||||||| | ||||||||||||||||| | |||||| |||||||||| || | || ||||| |
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| T |
15047681 |
aattgatggattccctgc-aagggctatgctccttcagagtgcatacgctgcctctaccacaacaggaaaaataactaaatgaatgaccaactcattctc |
15047779 |
T |
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| Q |
168 |
tcccctaattcttataactaaaac |
191 |
Q |
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| T |
15047780 |
tcccctaattcttataactaaaac |
15047803 |
T |
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