View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9558_low_4 (Length: 266)
Name: NF9558_low_4
Description: NF9558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9558_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 46184114 - 46184353
Alignment:
| Q |
1 |
aagaaatggaagaaatgaaatcagtatcaataattaataaatccaattcaacctatcgtaggtatggagaggtgttgggcaaatatctaaattccgagga |
100 |
Q |
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| T |
46184114 |
aagaaatggaagaaatgaaatcagtatcattaattaataaatccaattcaacctatcgtaggtatggagaggtgttgggcaaatatctaaattccgagga |
46184213 |
T |
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| Q |
101 |
gattgtaattgaaaaatttgattagttgtggctgaaaagtggaggaatttgagattatatgtgcaactgtactgcatactgcatctgtcaaatgataaac |
200 |
Q |
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| T |
46184214 |
gattgtaattgaaaaatttgattagttgtggccgaaaagtggacgaatttgagattatatgtgcaaatg-------tactgcatctgtcaaatgataaac |
46184306 |
T |
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| Q |
201 |
aaattaaagtggcaaagaatgcagagaattggttgaatagtaactgg |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46184307 |
aaattaaagtggcaaagaatgcagagaattggttgaatagtaactgg |
46184353 |
T |
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