View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9558_low_6 (Length: 250)
Name: NF9558_low_6
Description: NF9558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9558_low_6 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 34342800 - 34342556
Alignment:
| Q |
8 |
aagcagagaccaagtaaaaagtgtgtgagtagtccacacgttttatggctataaaaaataaagaaaacaagtgaaacaatcatcaaagaacaaagattca |
107 |
Q |
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| T |
34342800 |
aagcaaagaccaagtaaaaagtctgtgagtagtccacacgttttatggctataaaaaataaagaaaacaagtgaaactatcatcaaagaacaaagattca |
34342701 |
T |
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| Q |
108 |
atagagagaga--tatttcatttccagttcctgtttcaaaacagaacacaaacttggcctcaatggctaagaacaacaatatccacaaacacctcttact |
205 |
Q |
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| T |
34342700 |
atagagagagagatatttcatttccagttcctgtttcaaaacagaacacaaacttggcctcaatggctaagaacaacaacatccacaatcacctcttact |
34342601 |
T |
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| Q |
206 |
cttaccatttttgtcccttcttttctcaatccatgctaaactcac |
250 |
Q |
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| T |
34342600 |
cttatcatttttgtcccttcttttctcaatccatgctaaactcac |
34342556 |
T |
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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 9953285 - 9953338
Alignment:
| Q |
59 |
taaaaaataaagaaaacaagtgaaacaatcatcaaagaacaaagattcaataga |
112 |
Q |
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| T |
9953285 |
taaaaaataaagaaaacaagtgaaacaaccatcaaagaacaaggattcaataga |
9953338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 8979795 - 8979749
Alignment:
| Q |
59 |
taaaaaataaagaaaacaagtgaaacaatcatcaaagaacaaagatt |
105 |
Q |
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| T |
8979795 |
taaaaaataaagaaaacaagtgaaacaaccatcaaataacaaggatt |
8979749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 682 - 630
Alignment:
| Q |
34 |
gagtagtccacacgttttatggctataaaaaataaagaaaacaagtgaaacaa |
86 |
Q |
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| T |
682 |
gagtagtccacacattttattcacttaaaaaataaagaaaacaagtgaaacaa |
630 |
T |
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