View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9558_low_9 (Length: 243)
Name: NF9558_low_9
Description: NF9558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9558_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34141170 - 34141406
Alignment:
| Q |
1 |
agtgaaggtgaaacatattgtgtggacaaagaataacaggttgcaacatgaactaaactaaagaaagcatgttgtgaaatcaatttttagtacaataaat |
100 |
Q |
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| T |
34141170 |
agtgaaggtgaaacatattgtgtggacaaagaataacaggttgcaacatgaactaaactaaagaaagcatgttgtgaaatcaatttttagtacaataaat |
34141269 |
T |
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| Q |
101 |
ttaaaaataaaatagacatggagtgccaataaaacaatgtaatgaatgaagagtaggtcgaagggaaaatgagatggatgaa----------ccattgat |
190 |
Q |
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| T |
34141270 |
ttaaaaataaaatagacatggagtgccaataaaacaatgtaatgaatgaagagtaggttgaagggaaaatgagatggttgaagggaaaatagacattgat |
34141369 |
T |
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| Q |
191 |
ctcagaatgtaatggtctttcacttgtatgtgttttc |
227 |
Q |
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| T |
34141370 |
ctcagaatgtaatggtctttcacttgtatgtgttttc |
34141406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 35054444 - 35054332
Alignment:
| Q |
96 |
taaatttaaaaataaaatagacatggagtgcca----ataaaacaatgtaatgaatgaagagtaggtcgaagggaaaatgagatggatgaaccattgatc |
191 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||| ||||||||||||||||||| | |||||| ||| |
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| T |
35054444 |
taaatttaaaaataaaatagacatggagtgccagccaataatacaatgtaacgaatgaagagcaggttgaagggaaaatgagatggacggaccattaatc |
35054345 |
T |
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| Q |
192 |
tcagaatgtaatg |
204 |
Q |
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| T |
35054344 |
tcataatgtaatg |
35054332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 28717301 - 28717352
Alignment:
| Q |
106 |
aataaaatagacatggagtgccaataaaacaatgtaatgaatgaagagtaggt |
158 |
Q |
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| T |
28717301 |
aataaaatagacatggtgtgccaat-aaacaatgtaaagaatgaagagtaggt |
28717352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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