View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9559_low_1 (Length: 368)
Name: NF9559_low_1
Description: NF9559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9559_low_1 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 37742656 - 37742292
Alignment:
| Q |
1 |
tgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaactcccattctggttttgtgattctttataaatacagctgctagcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37742656 |
tgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgattctttataaatgcagctgctagcaat |
37742557 |
T |
|
| Q |
101 |
ggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742556 |
ggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttat |
37742457 |
T |
|
| Q |
201 |
tattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37742456 |
tattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagc |
37742357 |
T |
|
| Q |
301 |
tactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatggctccaacaccaa |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37742356 |
tactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatagctccaacaccaa |
37742292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 37749726 - 37749362
Alignment:
| Q |
1 |
tgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaactcccattctggttttgtgattctttataaatacagctgctagcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37749726 |
tgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgattctttataaatgcagctgctagcaat |
37749627 |
T |
|
| Q |
101 |
ggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749626 |
ggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttat |
37749527 |
T |
|
| Q |
201 |
tattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37749526 |
tattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagc |
37749427 |
T |
|
| Q |
301 |
tactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatggctccaacaccaa |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37749426 |
tactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatagctccaacaccaa |
37749362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 37752062 - 37752426
Alignment:
| Q |
1 |
tgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaactcccattctggttttgtgattctttataaatacagctgctagcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37752062 |
tgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgattctttataaatgcagctgctagcaat |
37752161 |
T |
|
| Q |
101 |
ggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752162 |
ggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttat |
37752261 |
T |
|
| Q |
201 |
tattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37752262 |
tattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcacctgc |
37752361 |
T |
|
| Q |
301 |
tactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatggctccaacaccaa |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37752362 |
tactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatagctccaacaccaa |
37752426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 44635546 - 44635631
Alignment:
| Q |
218 |
tctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctac |
303 |
Q |
| |
|
|||||||||| ||||| || ||||||||| ||| | ||||||||| ||||||||||| |||||||||||||| ||||| ||||| |
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| T |
44635546 |
tctctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagctac |
44635631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 13475 - 13548
Alignment:
| Q |
239 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagc |
312 |
Q |
| |
|
||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | |||||| |
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| T |
13475 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
13548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 19155 - 19228
Alignment:
| Q |
239 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagc |
312 |
Q |
| |
|
||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | |||||| |
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|
| T |
19155 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
19228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 1293119 - 1293046
Alignment:
| Q |
239 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagc |
312 |
Q |
| |
|
||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | |||||| |
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| T |
1293119 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
1293046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 12281717 - 12281633
Alignment:
| Q |
260 |
acagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagcgaaaccagctaggagcattactttgatgtctt |
344 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || ||||||||||| || || || ||||| | || || |||| |||||||||||| |
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| T |
12281717 |
acagagacaaattcacctattgccatgctgcatgcaccggctaccaacccggcaaaaccggttaagatcattgctttgatgtctt |
12281633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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