View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9559_low_8 (Length: 248)
Name: NF9559_low_8
Description: NF9559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9559_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 37162477 - 37162237
Alignment:
| Q |
1 |
ttcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaacca |
100 |
Q |
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| T |
37162477 |
ttcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaacca |
37162378 |
T |
|
| Q |
101 |
ccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaact |
200 |
Q |
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| T |
37162377 |
ccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaagccgaactgcaacagaacaaagattgctccaactaact |
37162278 |
T |
|
| Q |
201 |
tgagaatacatacatcactagtcatgatcttcatctctgct |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
37162277 |
tgagaatacatacatcactagtcatgatcttcatctttgct |
37162237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 37143976 - 37143830
Alignment:
| Q |
57 |
ccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaa |
156 |
Q |
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|||||| ||||||||||||||||||||| |||||| | |||||||||||||| || | ||||| ||||||| || | ||||||||| ||||||||||||| |
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| T |
37143976 |
ccttcagctcaaggagagcatgtctctcattctctttgcaaccaccagaaacggaagaaacattttttgcagcagctacagctccagaatagttggacaa |
37143877 |
T |
|
| Q |
157 |
aagaaggccgaactgcaacagaacaaagattgctccaactaacttga |
203 |
Q |
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| T |
37143876 |
gagaatcgcaaattgcaacacaataaagattgctccaactaacttga |
37143830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 37129733 - 37129533
Alignment:
| Q |
2 |
tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccac |
101 |
Q |
| |
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||||| ||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
37129733 |
tcacttttactgtcccaagattgcaaaaggttagagtcatccaacacaaagcttgccttcaactcaaggagagcatgtctctccttctgtatgcaa---- |
37129638 |
T |
|
| Q |
102 |
cagaaacagaggcaacatgtttt---gcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaa |
198 |
Q |
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| T |
37129637 |
-----------gcaacatgttttgccgcaacagctacaactccagagtagttggagaaaagaaggtcgaactgcaacacaacaaagattgttccaactaa |
37129549 |
T |
|
| Q |
199 |
cttgagaatacataca |
214 |
Q |
| |
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||||| | |||||||| |
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| T |
37129548 |
cttgatagtacataca |
37129533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 38745515 - 38745408
Alignment:
| Q |
2 |
tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccac |
101 |
Q |
| |
|
||||||||| ||||||||| || ||||||| || |||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||| || |
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| T |
38745515 |
tcactcttagtgtcccaagaaggtaaaaggtaagtgtcatccaacacaagacctgacttcaactcaaggagagcatgtctctccttctctatgcaactac |
38745416 |
T |
|
| Q |
102 |
cagaaaca |
109 |
Q |
| |
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|||||||| |
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|
| T |
38745415 |
cagaaaca |
38745408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 37136889 - 37136791
Alignment:
| Q |
2 |
tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaacca |
100 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| || ||| || | |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37136889 |
tcactcttactatcccaggtaggcaaaaggtaagtatcttcgacgacaaggcttgccttcaactcaaggagagcatgtctctccttctctatgcaacca |
37136791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 35144999 - 35145142
Alignment:
| Q |
46 |
cacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgttttgcatcaaccacagctccataa |
145 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||||||||||| ||||| |||| |||||||||||||| || ||| ||||| || |
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| T |
35144999 |
cacaaggccagccttcaactgtaggagaccatgtctctccttctctatgcaacct----aaac-----caacatgttttgca---actacaactccacaa |
35145086 |
T |
|
| Q |
146 |
tagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaactt |
201 |
Q |
| |
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||||||||||||||||| | |||||||||| ||| |||||| |||||||||||| |
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| T |
35145087 |
tagttggacaaaagaagctctaactgcaacaatacatagattgttccaactaactt |
35145142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 38745398 - 38745356
Alignment:
| Q |
172 |
caacagaacaaagattgctccaactaacttgagaatacataca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
38745398 |
caacagaacaaagattgctccaactaactttagaagacataca |
38745356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 3025301 - 3025418
Alignment:
| Q |
2 |
tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccac |
101 |
Q |
| |
|
||||||||||||||||||| || ||||||| || | |||||||||||| | | ||||||||||||||| || ||||||||||||||||| |||| || |
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| T |
3025301 |
tcactcttactgtcccaagaaggtaaaaggtaagtgttatccaacacaagacctgacttcaactcaaggagtgcttgtctctccttctctatgcaactac |
3025400 |
T |
|
| Q |
102 |
cagaaacagaggcaacat |
119 |
Q |
| |
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|||||||||| ||||||| |
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| T |
3025401 |
cagaaacagaagcaacat |
3025418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 29723986 - 29724074
Alignment:
| Q |
113 |
gcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaactt |
201 |
Q |
| |
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||||||||||| |||| | | | ||||||| || ||||||| || |||| | ||| |||||| |||||||||||||||||||||||| |
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|
| T |
29723986 |
gcaacatgtttggcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaactt |
29724074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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