View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9559_low_9 (Length: 239)

Name: NF9559_low_9
Description: NF9559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9559_low_9
NF9559_low_9
[»] chr5 (9 HSPs)
chr5 (1-223)||(37162703-37162925)
chr5 (1-220)||(38745728-38745947)
chr5 (13-211)||(35144227-35144425)
chr5 (13-198)||(37137131-37137319)
chr5 (13-142)||(37129975-37130104)
chr5 (82-213)||(37144405-37144533)
chr5 (88-209)||(37130125-37130246)
chr5 (98-206)||(37137291-37137399)
chr5 (1-142)||(37144261-37144393)
[»] chr4 (2 HSPs)
chr4 (1-220)||(3024852-3025071)
chr4 (13-194)||(29723523-29723707)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37162703 - 37162925
Alignment:
Q  1 tcattttatggaggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162703 tcattttatggaggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatc 37162802  T
Q  101 aacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagcctttcgaatttgcagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162803 aacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagcctttcgaatttgcagca 37162902  T
Q  201 gcttcatcttggagacaatcgag 223  Q
    |||||||||||||||||||||||    
T  37162903 gcttcatcttggagacaatcgag 37162925  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38745728 - 38745947
Alignment:
Q  1 tcattttatggaggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatc 100  Q
    |||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||     
T  38745728 tcatttgatgggggaagaattccaaaggatcttgctcgtctttcgcacttgcaatatcttgatctttcagacaatggccttgagggtacaatccctcatt 38745827  T
Q  101 aacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagcctttcgaatttgcagca 200  Q
    ||||||||||||| |||||||||||| |||||||||||||||  ||| ||||||| |||||| ||| |  ||  |||||||| ||||| ||||||||| |    
T  38745828 aacttggaaatctctctcatttgcagtaccttgatcttagttcaaatgatcttgtgggaaccgttcttcgtccacttggaagtctttcaaatttgcagga 38745927  T
Q  201 gcttcatcttggagacaatc 220  Q
     |||||||||||| ||||||    
T  38745928 acttcatcttggatacaatc 38745947  T

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Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 35144425 - 35144227
Alignment:
Q  13 ggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatcaacttggaaatc 112  Q
    ||||||||||||||||||||| |  ||||||| |||||||||||||||||||||| |   || || || ||||||  |||||||||||||||||||||||    
T  35144425 ggaagaattccaaatgatcttgcctgtctttcacacttgcaatatcttgatctttaatttaacagactggagggtgaaatccctcatcaacttggaaatc 35144326  T
Q  113 tgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagcctttcgaatttgcagcagcttcatcttg 211  Q
    | |||||||||||||| |||||||| |||| |||| ||||||| ||| |||||||| ||||||||||||||||||  |||||||||  | |||||||||    
T  35144325 tctctcatttgcagcatcttgatctcagttcgaatcatcttgtcggagccattcctcatcagcttggaagccttttaaatttgcaggtgtttcatcttg 35144227  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 37137131 - 37137319
Alignment:
Q  13 ggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatcaacttggaaatc 112  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||  |||| |||||||||||||||||| || |||||| |||||||    
T  37137131 ggaagaattccaaatgatcttgctcatctgtcgcacttgcaatatcttgatctttcaaggaatggcctcgagggtacaatccgtcctcaactcggaaatc 37137230  T
Q  113 tgtctcatttgcagcaccttgatcttagttggaataat---cttgttggaaccattccttatcagcttggaagcctttcgaatttgcag 198  Q
    | |||||||||||||| |||||||||||||  ||| ||   ||||||||||  |||||||||||||||||||  |||||  ||||||||    
T  37137231 tctctcatttgcagcatcttgatcttagttcaaattatggccttgttggaaaaattccttatcagcttggaaatctttcacatttgcag 37137319  T

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Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 37129975 - 37130104
Alignment:
Q  13 ggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatcaacttggaaatc 112  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||  |||| ||||| |||||||||||||||||||| |||||||||    
T  37129975 ggaagaattccaaatgatcttgcacgtcttttgcacttgcaatatcttgatctttcatggaatggcctcaagggtacaatccctcatcaatttggaaatc 37130074  T
Q  113 tgtctcatttgcagcaccttgatcttagtt 142  Q
    | |||||||||||||| |||||||||||||    
T  37130075 tctctcatttgcagcatcttgatcttagtt 37130104  T

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Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 37144405 - 37144533
Alignment:
Q  82 gagggtacaatccctcatcaacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaa 181  Q
    |||||||||||||||||||   |||||||||| |||||||||||  |||||||||||||| ||||| |||||||||||||||||||| |||| |||||||    
T  37144405 gagggtacaatccctcatc---ttggaaatctctctcatttgcaataccttgatcttagtgggaatgatcttgttggaaccattcctcatcaacttggaa 37144501  T
Q  182 gcctttcgaatttgcagcagcttcatcttgga 213  Q
    ||||||| ||||| ||| ||||||||||||||    
T  37144502 gcctttcaaatttacaggagcttcatcttgga 37144533  T

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Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 37130125 - 37130246
Alignment:
Q  88 acaatccctcatcaacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagccttt 187  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||||||  |||  ||||||||||||||||||| |||| |||||||||||||    
T  37130125 acaatccctcatcaacttggaaatctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatcaacttggaagccttt 37130224  T
Q  188 cgaatttgcagcagcttcatct 209  Q
    | ||||| ||| | ||||||||    
T  37130225 caaatttacaggaacttcatct 37130246  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 37137291 - 37137399
Alignment:
Q  98 atcaacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagcctttcgaatttgca 197  Q
    |||| ||||||||||| || ||||||||| |||||||||||||||  |||  |||||||||||| |||||| |||| ||||||||||||||  |||| ||    
T  37137291 atcagcttggaaatctttcacatttgcagtaccttgatcttagttcaaatgttcttgttggaacgattcctcatcaacttggaagcctttcagatttaca 37137390  T
Q  198 gcagcttca 206  Q
    | |||||||    
T  37137391 ggagcttca 37137399  T

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Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37144261 - 37144393
Alignment:
Q  1 tcattttatggaggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatc 100  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| ||| || |||||||||||| |||          |||| || |||||||||||||||    
T  37144261 tcatttgatggaggaagaattccaaataatcttgctcgtcttttgcatttacaatatcttgatattt----------cctcaagcgtacaatccctcatc 37144350  T
Q  101 aacttggaaatctgtctc-atttgcagcaccttgatcttagtt 142  Q
    |||||| |||||| | ||  ||||||| |||||||||||||||    
T  37144351 aacttgaaaatctctttcgttttgcagtaccttgatcttagtt 37144393  T

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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3025071 - 3024852
Alignment:
Q  1 tcattttatggaggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatc 100  Q
    |||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||    
T  3025071 tcatttgatgggggaagaattccaaaggatcttgctcgtctttcgcacttgcaatatcttgatctttcagacaatggccttgagggtacaatccctcatc 3024972  T
Q  101 aacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagcctttcgaatttgcagca 200  Q
    ||||||||||||| |||||||||||| |||||||||||||||  ||| ||||||  |||||| ||| |  ||  |||||||| ||||| || |||||| |    
T  3024971 aacttggaaatctctctcatttgcagtaccttgatcttagttcaaatgatcttgcgggaaccgttcttcgtccacttggaagtctttcaaaattgcagga 3024872  T
Q  201 gcttcatcttggagacaatc 220  Q
     |||||||| ||| ||||||    
T  3024871 acttcatctaggatacaatc 3024852  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 29723707 - 29723523
Alignment:
Q  13 ggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgagggtacaatccctcatcaacttggaaatc 112  Q
    ||||||| |||||||||||||  ||| ||||| || ||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||||||||||||     
T  29723707 ggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttcagagaatcgtctcgaggttacaatcccttatcaacttggaaatt 29723608  T
Q  113 tgtctcatttgcagcaccttgatcttagttggaataa---tcttgttggaaccattccttatcagcttggaagcctttcgaattt 194  Q
    | |||||||||  | |||||||||||||||  |||||   ||||||||||||||||||| |||| |||||||||||||| |||||    
T  29723607 tctctcatttgttgtaccttgatcttagttataataatgttcttgttggaaccattcctcatcaacttggaagcctttcaaattt 29723523  T

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