View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9560_high_2 (Length: 277)
Name: NF9560_high_2
Description: NF9560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9560_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 30579829 - 30579572
Alignment:
| Q |
19 |
tagacaagacaagatccaatgatgctttgtttctgacagaaatgaagtgaatgaagttaggccaannnnnnn-gttagagt-agtctacgctaatgtcta |
116 |
Q |
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| T |
30579829 |
tagacaagacaagatccaatgatgctttgtttctgacagaaatgaaatgaatgaagttaggccaattttttttgttagagttagtctacgctaatgtcta |
30579730 |
T |
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| Q |
117 |
ttgtcttcttcttgccgtgccggctcggctccttcaaactacttttannnnnnnnccttacaattagt---aacttaataaccataaa-tcaaataagag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
30579729 |
ttgtcttcttcttgccgtgccggctcggctccttcaaactacttttattttttt-ccttacaattagtggaaacttaataaccataaaatcaaataagag |
30579631 |
T |
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| Q |
213 |
aaaattattaaattaattcagatttattagcatgaaaagacatgatgcataacaccaaa |
271 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
30579630 |
aaaattattaaattaattcagatttattagcataaaaagacatgatgcataagaccaaa |
30579572 |
T |
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