View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9560_low_1 (Length: 359)
Name: NF9560_low_1
Description: NF9560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9560_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 28596887 - 28596682
Alignment:
| Q |
40 |
tattcaccactctctcttgcacccttgtggtatgaatgatgaatgtgatacagaaaacacaatgaagggtataaatttatatatatgatgaatgatgagt |
139 |
Q |
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| T |
28596887 |
tattcaccactctctcttgcacccttgtggtatgaatgatgaatgtgatacagaaaacacaatgaagggtataaatttatatatatgatgaatgatgagt |
28596788 |
T |
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| Q |
140 |
gagtgagtgtgtcaaagggttttgaaaagaaaatgtaactgatggaaatgaatttaaagcgtttgagagaaagaaaaggaagggactttaaggtgatatt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596787 |
gagtgagtgtgtcaaagggttttgaaaagaaaatgtaactgatggaaatgaatttaaagcgtttgagagaaagaaaaggaagggactttaaggtgatatt |
28596688 |
T |
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| Q |
240 |
ttctcc |
245 |
Q |
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|||||| |
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| T |
28596687 |
ttctcc |
28596682 |
T |
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