View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9560_low_4 (Length: 331)

Name: NF9560_low_4
Description: NF9560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9560_low_4
NF9560_low_4
[»] chr1 (5 HSPs)
chr1 (56-321)||(38085157-38085422)
chr1 (88-308)||(38090124-38090342)
chr1 (82-218)||(38142058-38142197)
chr1 (82-218)||(38155211-38155350)
chr1 (87-219)||(38110478-38110610)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 56 - 321
Target Start/End: Original strand, 38085157 - 38085422
Alignment:
Q  56 tgtagcaaacaaaaaggaaggaaattaaaaggacctgaattgattttccagagtcatttacgtaacggggctcattcataagctcccaagcaaaaatagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38085157 tgtagcaaacaaaaaggaaggaaattaaaaggacctgaattgattttccagagtcatttacgtaacggggctcattcataagctcccaagcaaaaatagt 38085256  T
Q  156 tgggtcatccttgtataacactccactaatggtgttctttcttgtcagcacagcctgtaatcaaccatgaatcaaaagaataatgctaccaatctttttg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38085257 tgggtcatccttgtataacactccactaatggtgttctttcttgtcagcacagcctgtaatcaaccatgaatcaaaagaataatgctaccaatctttttg 38085356  T
Q  256 ggttacatacatgaaaatatgaccgtacataaaattatttttaacaatccagtaaactaaatgtgt 321  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  38085357 ggttacatacatgaaaatacgaccgtatataaaattatttttaacaatccagtaaactaaatgtgt 38085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 38090124 - 38090342
Alignment:
Q  88 acctgaattgattttccagagtcatttacgtaacggggctcattcataagctcccaagcaaaaatagttgggtcatccttgtataacact------ccac 181  Q
    |||||||| ||||||||| |||||| ||||   || || |||||||| ||||||||||||||||| ||||||||||||||||||||||||      ||||    
T  38090124 acctgaatcgattttccaaagtcatgtacg---cgaggttcattcattagctcccaagcaaaaattgttgggtcatccttgtataacactaacaccccac 38090220  T
Q  182 taatggtgttctttcttgtcagcacagcctgtaatcaaccatgaatcaaaagaataatgctaccaatctttttgggttacatacatgaaaatatgaccgt 281  Q
    ||||||||||||||||||| |||||| |||| |||||| |||    | ||||||||||| | ||||  |||| |||||| ||||||||||| ||||| ||    
T  38090221 taatggtgttctttcttgtaagcacaacctgcaatcaatcat----ccaaagaataatgttgccaaa-ttttagggttaaatacatgaaaacatgacagt 38090315  T
Q  282 acataaaattatttttaacaatccagt 308  Q
    | ||||||||| |||||||||||||||    
T  38090316 atataaaattacttttaacaatccagt 38090342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 38142058 - 38142197
Alignment:
Q  82 aaaaggacctgaattgattttccagagtcatt---tacgtaacggggctcattcataagctcccaagcaaaaatagttgggtcatccttgtataacactc 178  Q
    ||||||||||||||||||||||| ||||||||   || | |||| || ||||||||||||||||| |||||||| |||||||||||||| || || ||||    
T  38142058 aaaaggacctgaattgattttccggagtcattaaatatgcaacgaggttcattcataagctcccatgcaaaaatggttgggtcatccttatacaatactc 38142157  T
Q  179 cactaatggtgttctttcttgtcagcacagcctgtaatca 218  Q
    || ||||||||||||||||||||||||||||||| |||||    
T  38142158 cattaatggtgttctttcttgtcagcacagcctgcaatca 38142197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 38155211 - 38155350
Alignment:
Q  82 aaaaggacctgaattgattttccagagtcatt---tacgtaacggggctcattcataagctcccaagcaaaaatagttgggtcatccttgtataacactc 178  Q
    ||||||||||||||||||||||||||||||||   || | |||| || ||||||||||||||||| |||||||||||||| ||||| |||||||| || |    
T  38155211 aaaaggacctgaattgattttccagagtcattatttatgcaacgaggttcattcataagctcccatgcaaaaatagttggatcatctttgtataataccc 38155310  T
Q  179 cactaatggtgttctttcttgtcagcacagcctgtaatca 218  Q
    |  | ||||||||||||||||||||||| ||||| |||||    
T  38155311 cgtttatggtgttctttcttgtcagcacggcctgcaatca 38155350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 38110478 - 38110610
Alignment:
Q  87 gacctgaattgattttccagagtcatttacgtaacggggctcattcataagctcccaagcaaaaatagttgggtcatccttgtataacactccactaatg 186  Q
    |||||||||||| ||||||||||||||||| ||||| || || || |||||||||||||| ||||| ||||| |||||||| |||||||| ||| | ||     
T  38110478 gacctgaattgaatttccagagtcatttacataacgtggttcgtttataagctcccaagcgaaaatggttggatcatccttatataacaccccatttata 38110577  T
Q  187 gtgttctttcttgtcagcacagcctgtaatcaa 219  Q
    ||||| |||||||||||||||||||| ||||||    
T  38110578 gtgttatttcttgtcagcacagcctgcaatcaa 38110610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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