View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9561_high_1 (Length: 526)
Name: NF9561_high_1
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 89 - 520
Target Start/End: Original strand, 6233514 - 6233945
Alignment:
| Q |
89 |
ctaatgagtaaaatataaaatggaaaagaatatatttttattccaaaatatcaaaagatagtacttgtcccaataactttacataagaacaaaaactaac |
188 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6233514 |
ctaatgagtaaaatataaaatggaaaggaatatatttttattccaaaatatcaaaagatagtacttgtcccaataactttacataagaacaaaaactaac |
6233613 |
T |
|
| Q |
189 |
tcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatctatcagcatattagcctcatcctctgtcatg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
6233614 |
tcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatctatgagcatattagcctcatcctctatcatg |
6233713 |
T |
|
| Q |
289 |
aagtttatagcaaatttcccactccggcctatatggttaagatagttttcaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaat |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6233714 |
aagtttatagcaaatttcccactccggcctatatggttaagatagttttcaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaat |
6233813 |
T |
|
| Q |
389 |
ctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaagaaactcaccttcaatggtatccatagtgttctggtccct |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6233814 |
ctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaagaaactcacgttcaatggtatccatagtgttctggtccct |
6233913 |
T |
|
| Q |
489 |
gtcaccatgaatgacataatgatctctgcttc |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6233914 |
gtcaccatgaatgacataatgatctctgcttc |
6233945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 157 - 455
Target Start/End: Original strand, 6226324 - 6226622
Alignment:
| Q |
157 |
cccaataactttacataagaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatat |
256 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6226324 |
cccaataactttacagaagaacaaaatttaactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatat |
6226423 |
T |
|
| Q |
257 |
ctatcagcatattagcctcatcctctgtcatgaagtttatagcaaatttcccactccggcctatatggttaagatagttttcaggcacagttgggagatc |
356 |
Q |
| |
|
|||| | |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
6226424 |
ctatgatcatactagtctcatcctctgtcatgaagtttatagcaaatttctcactccggcctatacggtgaagatagttttcaggcacagttgggagatc |
6226523 |
T |
|
| Q |
357 |
atagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaagaaactc |
455 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| | ||| |||||| |
|
|
| T |
6226524 |
atagtttacgatcagagacgctttatgcacatctgcaccacaaagctgggggtcggtggtaatgagaacttgaggagagctagactgggaaaaaaactc |
6226622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 447
Target Start/End: Original strand, 6240851 - 6240970
Alignment:
| Q |
328 |
agatagttttcaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaactt |
427 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |||||||||| ||| |||| |||| ||| | || | |||||||||||||||||||| | |
|
|
| T |
6240851 |
agatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggtaatgagaatct |
6240950 |
T |
|
| Q |
428 |
gaggagagccagactcgaaa |
447 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
6240951 |
gaggagaaccagactggaaa |
6240970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 6249086 - 6249169
Alignment:
| Q |
174 |
agaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatc |
257 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||| ||| ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
6249086 |
agaacaaaaattaactcatcagagcaaatcagcaacatttgatggcagctcctctatagtcacattgtagaatttctgaatatc |
6249169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 6240565 - 6240645
Alignment:
| Q |
17 |
aataacttcctaatcaaacaaatttgataaaatcctaatccaaaataacatcatatcagatgtgtaacatttctaatgagta |
98 |
Q |
| |
|
||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||| ||||||| ||| | |||||| ||||||| |
|
|
| T |
6240565 |
aataacttcttaattaaacaaatttgagagaatcccaatcc-aaataacatcaaatcagatctgttagatttctcatgagta |
6240645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 6226183 - 6226215
Alignment:
| Q |
17 |
aataacttcctaatcaaacaaatttgataaaat |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6226183 |
aataacttcctaatcaaacaaatttgataaaat |
6226215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 6240672 - 6240765
Alignment:
| Q |
164 |
actttacataagaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatc |
257 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| |||| ||||| ||||||| |||||||||||||||||| || ||| ||| |||||| ||||| |
|
|
| T |
6240672 |
acttaacatatgaacaaaaatcaactcatgagagcaaatcagcaaaatttgatggcagctcctctataatcacattggagagtttctggatatc |
6240765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 165 - 493
Target Start/End: Complemental strand, 17545799 - 17545456
Alignment:
| Q |
165 |
ctttacataagaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatctatcagc |
264 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | | |
|
|
| T |
17545799 |
ctttacataagaacaaaaatgaactcatcagagcaactcatcaaaattatatggcagctcctctataaccatattgtagaatttctgaatatctatgatc |
17545700 |
T |
|
| Q |
265 |
atattagcctcatcctctgtcatgaagtttatagcaa------------atttcccactccggc---ctatatggttaagatagttttcaggcacagttg |
349 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||| | | |||||||||||||||| ||| || |
|
|
| T |
17545699 |
attgtagcctcatcctttgtcataaagtttatagcaacacatcttccaaattgcccactccggcggcctatacgataaagatagttttcaggcgcagctg |
17545600 |
T |
|
| Q |
350 |
ggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaag |
449 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||||||||||||| | |||||| |||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
17545599 |
ggagatcatagtttacgatcagagatactttatgcacatctgtaccacaaaccaaggggtctgtggtaatgagaacatgaggagagccagactgggaaaa |
17545500 |
T |
|
| Q |
450 |
aaactcaccttcaatggtatccatagtgttctggtccctgtcac |
493 |
Q |
| |
|
||||| | ||||| ||||| |||||||||||||| |||||| |
|
|
| T |
17545499 |
gaactcgcgcacaatgatatccctagtgttctggtccatgtcac |
17545456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University