View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_high_3 (Length: 407)
Name: NF9561_high_3
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 50099303 - 50099684
Alignment:
| Q |
12 |
agagacgaggtagtgagtggctaatgtcatagtttcaaggtaacatatatattattattagatatatgagtatagttttgtttattaaaatgcttttgtg |
111 |
Q |
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| T |
50099303 |
agagacgaggtagtgagtggctaatgtcatagtttcaaggtaacatatatattattattagatatatgagtatagttttgtttattaaaatgcttttgtg |
50099402 |
T |
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| Q |
112 |
ttattttgttgcttattatataaaccaaagcatttcccaccttttcacaatgaaaagtgtttcatgtgtgctcttctttattttttatattcatcgtaag |
211 |
Q |
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| T |
50099403 |
ttattttgttgcttattatacaaaccaaagcatttcccaccttttcacaatgaaaagtgtttcatgtgtgctcttctttattttttatattcatcgtaag |
50099502 |
T |
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| Q |
212 |
aaagaaaaggttcccaaacgaatatacgttttgcagattgctgctttttggttatgcttcactgcttttcttgcactatnnnnnnnttaaataacaataa |
311 |
Q |
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| T |
50099503 |
aaagaaaaggttcccaaacgaatatacgttttgcagattgctgctttttggttatgcttcactgcttttcttgcactataaaaaaattaaataacaataa |
50099602 |
T |
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| Q |
312 |
agctatttttccaaatacaattataattataatattcaagagtgcttgacttgcttaaacatgaattttgatactcattcct |
393 |
Q |
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| T |
50099603 |
agctatttttccaaatacaattataattataatattcaagagtgcttgacttgcttaaacatgaattttgatactcattcct |
50099684 |
T |
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