View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9561_low_10 (Length: 368)

Name: NF9561_low_10
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9561_low_10
NF9561_low_10
[»] chr1 (3 HSPs)
chr1 (17-341)||(15885626-15885950)
chr1 (82-355)||(12609903-12610176)
chr1 (17-355)||(12636999-12637334)
[»] scaffold0059 (1 HSPs)
scaffold0059 (83-341)||(62165-62423)
[»] chr6 (2 HSPs)
chr6 (82-355)||(21779811-21780084)
chr6 (220-264)||(12438393-12438437)
[»] chr3 (14 HSPs)
chr3 (82-355)||(23039039-23039312)
chr3 (82-355)||(23145918-23146191)
chr3 (130-355)||(22971949-22972174)
chr3 (141-353)||(22946404-22946616)
chr3 (124-355)||(23036168-23036399)
chr3 (82-355)||(23148756-23149029)
chr3 (82-341)||(23024284-23024543)
chr3 (94-341)||(23140058-23140305)
chr3 (124-272)||(23032780-23032928)
chr3 (170-293)||(23017122-23017245)
chr3 (107-281)||(22941328-22941502)
chr3 (107-251)||(22831937-22832081)
chr3 (152-338)||(22986292-22986478)
chr3 (168-251)||(22916686-22916769)
[»] scaffold0554 (1 HSPs)
scaffold0554 (86-355)||(6487-6756)
[»] chr8 (2 HSPs)
chr8 (107-251)||(5593984-5594128)
chr8 (170-338)||(23610232-23610400)
[»] chr5 (2 HSPs)
chr5 (214-290)||(41465802-41465878)
chr5 (220-264)||(41654614-41654658)
[»] chr4 (1 HSPs)
chr4 (184-246)||(55955001-55955063)
[»] chr2 (1 HSPs)
chr2 (305-341)||(2433634-2433670)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 15885626 - 15885950
Alignment:
Q  17 agaaagcacaaactgaagttagagaaatgttcaacgcaaaaggagttgttgatgagaactttcttaatgaactcaaatatttgaagtcaattgtgaaaga 116  Q
    |||||||||||  |||||| ||||||||||||||| |||||||| |||||| |||||||| | ||||||| ||||  |||||||||||| ||||||||||    
T  15885626 agaaagcacaagatgaagtaagagaaatgttcaacacaaaaggaattgttggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaaga 15885725  T
Q  117 gacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtg 216  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  15885726 gaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgaacaagcatgtgagattgatggttatcatataccaaccaaaagcaaggtg 15885825  T
Q  217 atagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaag 316  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||| || ||||    
T  15885826 atagtcaatgcatgggcgattggaagagatccaaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaag 15885925  T
Q  317 ggactaattttgagtacattccttt 341  Q
    ||| |||||||||||||||||||||    
T  15885926 ggaataattttgagtacattccttt 15885950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 82 - 355
Target Start/End: Complemental strand, 12610176 - 12609903
Alignment:
Q  82 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 181  Q
    ||||||||||  ||||| |||||| ||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||  ||||||||||||||    
T  12610176 aatgaactcacttatttaaagtcagttgtgaaagagaccttaaggttacatcctccaggtcctcttttacttccaagagaatgtggacaagcatgtgaga 12610077  T
Q  182 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 281  Q
    ||||||| |||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||| |||| |||||||||    
T  12610076 ttgatgggtatcgtataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaagtactggactgaaccagagaagttttatcc 12609977  T
Q  282 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcctttcggcgccggaagaa 355  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| || || || |||||||    
T  12609976 ggagagattcatcggtagctctattgactacaaagggaataattttgagtacattccctttggtgctggaagaa 12609903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 12637334 - 12636999
Alignment:
Q  17 agaaagcacaaactgaagttagagaaatgttcaacgcaaaaggagttgttgatgagaactttcttaatgaactcaaatatttgaagtcaattgtgaaaga 116  Q
    |||||||||||  |||||| ||| |||| ||||||   ||||||  ||||| ||| |||| | | ||||||||| |||||||||||| | | ||||||||    
T  12637334 agaaagcacaatatgaagtgagaaaaatattcaacaagaaaggaactgttggtgaaaactatataaatgaactcgaatatttgaagttagtagtgaaaga 12637235  T
Q  117 gacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtg 216  Q
    |||  ||||||||||||||||| ||||||||||| ||   |||||||||  |||||||||||| ||||| || ||||||||||||  |||||||||||||    
T  12637234 gactctaaggttacaccctccaactcctcttttactt---agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtg 12637138  T
Q  217 atagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaag 316  Q
    ||||| ||||||||| ||||||| |||||| ||||||| ||||||||||| ||||||||| |||| ||||||||||| ||||||||| |||| |||||||    
T  12637137 atagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaag 12637038  T
Q  317 ggactaattttgagtacattcctttcggcgccggaagaa 355  Q
    | | ||||||||||||||||||||| || || |||||||    
T  12637037 gaaataattttgagtacattccttttggtgcaggaagaa 12636999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 83 - 341
Target Start/End: Complemental strand, 62423 - 62165
Alignment:
Q  83 atgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagat 182  Q
    |||||||||||||  ||||||||||||||||||||||  | ||||||||||| |||| | |||||||| ||||||||||||||| | |||||||||||||    
T  62423 atgaactcaaatacgtgaagtcaattgtgaaagagaccctgaggttacaccccccaggtgctcttttacttccaagagaatgtagagaagcatgtgagat 62324  T
Q  183 tgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccg 282  Q
    |||||| |||||||||||||| ||||  ||| ||||||| |||||||||||||| ||||||||| ||| ||| ||||| ||||| ||||||||||||||     
T  62323 tgatgggtatcatataccaatgaaaacaaagctgatagttaatgcatgggcaatcggaagagatccaaggtactggacggaaccagagaggttttatcca 62224  T
Q  283 gagagattcatcggtagctcttttgattacaaagggactaattttgagtacattccttt 341  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||||||||||||    
T  62223 gagagattcattggtagttctattgactacaacgggaataatttcgagtacattccttt 62165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 82 - 355
Target Start/End: Complemental strand, 21780084 - 21779811
Alignment:
Q  82 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 181  Q
    ||||||||||| |||||||| ||| |||| ||||| || |||||| ||||||||||||| ||||||||  | || ||||||||||  ||||||||||| |    
T  21780084 aatgaactcaattatttgaaatcagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgtagtcaagcatgtgata 21779985  T
Q  182 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 281  Q
    |  |||| || || || || || || | |||||||||| | ||||| |||||||||| ||||||| |||| || ||||||||||| |||| |||||||||    
T  21779984 taaatggttaccacattccgattaagactaaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaaccagagatgttttatcc 21779885  T
Q  282 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcctttcggcgccggaagaa 355  Q
     ||||||||||||| ||||  | |||| |  ||||||| |||||||||||||||||| || || ||||||||||    
T  21779884 agagagattcatcgatagcgatattgactttaaagggagtaattttgagtacattccatttggtgccggaagaa 21779811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 12438437 - 12438393
Alignment:
Q  220 gtgaatgcatgggcaattggaagagattcaaagtattggactgaa 264  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||    
T  12438437 gtgaatgcatgggcaattggaagagacccaaagtattggaatgaa 12438393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 355
Target Start/End: Complemental strand, 23039312 - 23039039
Alignment:
Q  82 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 181  Q
    ||||||||||| |||||||||||| |||| ||||| ||  | ||||||||||||||| | ||||||||  | ||||||||||||   ||| |||||||||    
T  23039312 aatgaactcaattatttgaagtcagttgtcaaagaaaccctgaggttacaccctccaacacctcttttgctgccaagagaatgtcgtcaaacatgtgaga 23039213  T
Q  182 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 281  Q
    |  |||| ||||| ||||| || || |||||||||||||| ||||| |||||||||| ||||||| |||| || |||||||| || ||||| ||||||||    
T  23039212 taaatggttatcacatacctattaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggactgagccggagagattttatcc 23039113  T
Q  282 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcctttcggcgccggaagaa 355  Q
     ||||||||| | |  ||| |  |||| || ||||| | ||||| ||||||||||||||| || ||||||||||    
T  23039112 agagagattccttgacagcgccattgactataaaggaagtaattatgagtacattccttttggtgccggaagaa 23039039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 355
Target Start/End: Complemental strand, 23146191 - 23145918
Alignment:
Q  82 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 181  Q
    ||||||||||| |||||||| | | |||| ||||| || |||||| ||||||||||||| ||||||||  | || ||||||||||  |||| |||||| |    
T  23146191 aatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgtagtcaagaatgtgata 23146092  T
Q  182 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 281  Q
    |  |||| ||||| ||||| || || | ||||||| |||| ||||| |||||| ||| ||||||| |||| || ||||||||||| ||||||||||||||    
T  23146091 taaatggttatcacataccgattaagactaaggtgttagtcaatgcttgggcagttgcaagagatccaaactactggactgaaccagagaggttttatcc 23145992  T
Q  282 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcctttcggcgccggaagaa 355  Q
     |||||||||||||  |||  | |||| || ||||||| ||| ||||||||||||||||| || || |||||||    
T  23145991 agagagattcatcgacagcgatattgactataaagggagtaactttgagtacattccttttggtgctggaagaa 23145918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 130 - 355
Target Start/End: Complemental strand, 22972174 - 22971949
Alignment:
Q  130 caccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcat 229  Q
    |||||||| | |||||||||||| ||||| |  |||  |||||| |||||||||||||| ||||| |||||||||||||||| ||||||| | ||||| |    
T  22972174 caccctcctggtcctcttttagtaccaagggtgtgtggacaagcttgtgagattgatggttatcacataccaatcaaaagtagggtgataatcaatgctt 22972075  T
Q  230 gggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaattttga 329  Q
    ||||||||||||| ||| |||| ||||||||||| || || | ||||||||| || ||||| || | ||| ||| |||||| |||||| || ||||||||    
T  22972074 gggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctcttgatttcaaaggaacaaattttga 22971975  T
Q  330 gtacattcctttcggcgccggaagaa 355  Q
    ||||||||| || || || |||||||    
T  22971974 gtacattccatttggtgctggaagaa 22971949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 141 - 353
Target Start/End: Complemental strand, 22946616 - 22946404
Alignment:
Q  141 tcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattgga 240  Q
    |||||||||| |||| || |  ||| |||||||||||||||||||||| ||||| ||||||||||| |||| ||||||| | ||||| ||||||||||||    
T  22946616 tcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatcacataccaatcaatagtagggtgataatcaatgcttgggcaattgga 22946517  T
Q  241 agagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcctt 340  Q
    || ||| |||| ||||||||||| || || | ||||||||| || ||||| || | ||| ||| |||||| |||||| || ||||||||||||||||| |    
T  22946516 agggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattccat 22946417  T
Q  341 tcggcgccggaag 353  Q
    | || ||||||||    
T  22946416 ttggtgccggaag 22946404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 124 - 355
Target Start/End: Complemental strand, 23036399 - 23036168
Alignment:
Q  124 aggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtga 223  Q
    ||||||||||||||| | ||||||||  | |||||||| |||   |||||||||| |||  |||| ||||| ||||| || || |||||||| | | | |    
T  23036399 aggttacaccctccaacacctcttttgctaccaagagagtgtgttcaagcatgtgtgataaatggttatcacatacctattaagagtaaggtaacaataa 23036300  T
Q  224 atgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaa 323  Q
    |||| |||||||||| ||||||| |||| || ||||||||||| ||||| |||||||| |||||||||||||  ||| || |||| |||||||||| |||    
T  23036299 atgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagtaa 23036200  T
Q  324 ttttgagtacattcctttcggcgccggaagaa 355  Q
     ||||||||||||||||| || ||||||||||    
T  23036199 ctttgagtacattccttttggtgccggaagaa 23036168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 355
Target Start/End: Complemental strand, 23149029 - 23148756
Alignment:
Q  82 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 181  Q
    ||||||||||| |||||||| | | |||| ||||| || |||||| |||||||||| || ||||||||  | || ||||||||||  ||||| ||||| |    
T  23149029 aatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccggcacctcttttgttaccgagagaatgtagtcaagcgtgtgata 23148930  T
Q  182 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 281  Q
    |  |||| ||||| || || || || | ||| |||||| | ||||| |||||||||| |||||||||||| || ||||||||||| ||||||||||||||    
T  23148929 taaatggttatcacattccgattaagactaaagtgataatcaatgcttgggcaattgcaagagattcaaactactggactgaaccagagaggttttatcc 23148830  T
Q  282 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcctttcggcgccggaagaa 355  Q
     ||||||||||| |  |||  | |||| || ||||||| ||| || |||||||||||||| || ||||||||||    
T  23148829 agagagattcattgaaagcgatattgactataaagggagtaacttcgagtacattccttttggtgccggaagaa 23148756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 82 - 341
Target Start/End: Complemental strand, 23024543 - 23024284
Alignment:
Q  82 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 181  Q
    |||||||| || |||||||| |||||||| ||||| ||  | |||||||||||||| || || |||||| | || ||||||||| | ||| ||||| |||    
T  23024543 aatgaacttaattatttgaaatcaattgtcaaagaaaccctgaggttacaccctccggcaccacttttaataccgagagaatgtgctcaatcatgtaaga 23024444  T
Q  182 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 281  Q
    | || || ||| | || ||||  || | |||||||||||| ||||| |||||||||| ||||||| |||| || ||||| ||||| ||||||||||||||    
T  23024443 tagacggttatgacattccaactaagactaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggaccgaaccagagaggttttatcc 23024344  T
Q  282 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattccttt 341  Q
     ||||||||||||| |||   | |||| || ||||||| ||| |||||||| ||||||||    
T  23024343 agagagattcatcgatagtgatattgactataaagggagtaactttgagtatattccttt 23024284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 341
Target Start/End: Complemental strand, 23140305 - 23140058
Alignment:
Q  94 tatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatc 193  Q
    |||||||| ||||| || ||||| || || ||||||||| |||| |  ||||||||  | |||||||| |||   ||||||||||||||  |||| ||||    
T  23140305 tatttgaaatcaatcgtcaaagaaaccttgaggttacacactccggtgcctcttttgctaccaagagagtgtggtcaagcatgtgagatacatggttatc 23140206  T
Q  194 atataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcat 293  Q
    | |||||| | || | ||||||| | || |||||||||||||| |  |||||| |||| || ||||||||||| ||||  |||||||| |||||||||||    
T  23140205 acataccatttaagactaaggtggtcgtcaatgcatgggcaatcgcgagagatccaaactactggactgaaccagagaaattttatccagagagattcat 23140106  T
Q  294 cggtagctcttttgattacaaagggactaattttgagtacattccttt 341  Q
     || | | || |||| || ||||||| | |||||||||||||||||||    
T  23140105 gggaaacactattgactataaagggagtgattttgagtacattccttt 23140058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 272
Target Start/End: Complemental strand, 23032928 - 23032780
Alignment:
Q  124 aggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtga 223  Q
    ||||| |||||| |||  ||||||||  | |||||||||||    ||||||||||||||  |||| ||||| |||||||| ||||||||||||||||| |    
T  23032928 aggttccaccctacagtacctcttttgctaccaagagaatgcggtcaagcatgtgagataaatggttatcacataccaattaaaagtaaggtgatagtca 23032829  T
Q  224 atgcatgggcaattggaagagattcaaagtattggactgaacctgagag 272  Q
    |||| |||||||||| ||||||| |||| || ||||||||||| |||||    
T  23032828 atgcttgggcaattgcaagagatccaaactactggactgaaccagagag 23032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 23017245 - 23017122
Alignment:
Q  170 aagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctga 269  Q
    |||||||||||||  |||| ||||| |||||| | || | |||||||||| | ||||| |||||||| | ||||||| |||| || ||||||||||| ||    
T  23017245 aagcatgtgagatacatggttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccaga 23017146  T
Q  270 gaggttttatccggagagattcat 293  Q
    || ||||||||| |||||||||||    
T  23017145 gaagttttatccagagagattcat 23017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 22941328 - 22941502
Alignment:
Q  107 ttgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaa 206  Q
    ||||||||||||| || || || |||||||| ||| |  ||||  ||||||||||||||  |||||||||||| ||  |||| ||| |||||||  | ||    
T  22941328 ttgtgaaagagacattgagattgcaccctcctgctgcatttttgcttccaagagaatgtggacaagcatgtgaaataaatgggtatgatataccttttaa 22941427  T
Q  207 aagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 281  Q
    ||| || |||||||||||||| ||||| |||||||||||| ||||  |||||  ||| || ||||| ||||||||    
T  22941428 aagcaaagtgatagtgaatgcttgggccattggaagagatccaaatcattgggatgacccagagagattttatcc 22941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 22832081 - 22831937
Alignment:
Q  107 ttgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaa 206  Q
    ||||||||||||| || || |||||||||||  |  |  ||||  ||||||||||||||  | |||||||||||||  |||| ||| |||||||  | ||    
T  22832081 ttgtgaaagagacattgagattacaccctccgtcaacatttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaa 22831982  T
Q  207 aagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 251  Q
    ||| || |||||||||||||| ||||| |||||||||||| ||||    
T  22831981 aagcaaagtgatagtgaatgcttgggctattggaagagatccaaa 22831937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 338
Target Start/End: Complemental strand, 22986478 - 22986292
Alignment:
Q  152 ttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 251  Q
    |||||||||| |||  |||||| ||||||||| |||| ||| | |||||  | |||||||  ||  | || ||||| ||||| |||||| | ||| | ||    
T  22986478 ttccaagagagtgtggacaagcttgtgagattaatggttattacatacctgtaaaaagtagagtcctcgttaatgcttgggccattggacgggatcctaa 22986379  T
Q  252 gtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcc 338  Q
     ||||||| ||| || || | ||||||||| ||||| || || | ||| ||| |||||| |||||| ||||||||||||||||||||    
T  22986378 atattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattcc 22986292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 22916686 - 22916769
Alignment:
Q  168 acaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 251  Q
    |||||||||||| ||  |||| |||  ||||||| | ||||| || |||||||||||||| ||||| |||||||||||| ||||    
T  22916686 acaagcatgtgaaataaatgggtatggtataccatttaaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaa 22916769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 355
Target Start/End: Original strand, 6487 - 6756
Alignment:
Q  86 aactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattga 185  Q
    ||||||| |||||||| ||| | || ||||| ||  | ||||||||||||||||| ||||||||  | ||||||||||||    |||||||||||||  |    
T  6487 aactcaattatttgaaatcagtcgtcaaagaaacccttaggttacaccctccagcacctcttttgctaccaagagaatgtggtaaagcatgtgagataaa 6586  T
Q  186 tggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggag 285  Q
    ||| ||| | |||||  | |  |||||||||||| | ||||| |||||||||| ||||||| |||| |  ||||||||||| |||||||||||||| |||    
T  6587 tggttataacataccgtttaggagtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagaggttttatccagag 6686  T
Q  286 agattcatcggtagctcttttgattacaaagggactaattttgagtacattcctttcggcgccggaagaa 355  Q
    |||||||  |  ||| || |||| || ||||||  ||||||||||||||||||||| || || |||||||    
T  6687 agattcactgacagcactattgactataaagggggtaattttgagtacattccttttggtgctggaagaa 6756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 5593984 - 5594128
Alignment:
Q  107 ttgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaa 206  Q
    ||||||||||||| || || |||||||||||  |  |  ||||  ||||||||||||||  | |||||||||||||  |||| ||| |||||||  | ||    
T  5593984 ttgtgaaagagacattgagattacaccctccgtcaacatttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaa 5594083  T
Q  207 aagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 251  Q
    ||| || |||||||||||||| ||||| |||||||||||| ||||    
T  5594084 aagcaaagtgatagtgaatgcttgggctattggaagagatccaaa 5594128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 338
Target Start/End: Complemental strand, 23610400 - 23610232
Alignment:
Q  170 aagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctga 269  Q
    |||| ||||||||| |||| |||||||||||  | |||||||  ||  || | ||||| |||||||| ||||| ||| | || ||||||| ||| || ||    
T  23610400 aagcttgtgagattaatggctatcatatacctgtaaaaagtagagtcctaataaatgcttgggcaataggaagggatcctaaatattggaatgacccaga 23610301  T
Q  270 gaggttttatccggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattcc 338  Q
     | ||||||||| || || || || | ||||||| |||||| |  ||| ||||||||||||| ||||||    
T  23610300 taagttttatcctgaaaggtttattgatagctctattgatttctcaggaactaattttgagttcattcc 23610232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 41465802 - 41465878
Alignment:
Q  214 gtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagatt 290  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||| |||||| || | ||||  ||||||||||||    
T  41465802 gtgatagtaaatgcatgggcgattggaagagatccaaagtattggagtgaaccggaaaagtttattccggagagatt 41465878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 41654614 - 41654658
Alignment:
Q  220 gtgaatgcatgggcaattggaagagattcaaagtattggactgaa 264  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||    
T  41654614 gtgaatgcatgggcaattggaagagaccaaaagtattggattgaa 41654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 55955063 - 55955001
Alignment:
Q  184 gatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagat 246  Q
    ||||||||| | |||||||| || | ||  |||||||| ||||||||||||||||||||||||    
T  55955063 gatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagat 55955001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 2433634 - 2433670
Alignment:
Q  305 ttgattacaaagggactaattttgagtacattccttt 341  Q
    |||||||||||||| |||||||||||||||| |||||    
T  2433634 ttgattacaaagggtctaattttgagtacataccttt 2433670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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