View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_12 (Length: 337)
Name: NF9561_low_12
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 44954984 - 44954687
Alignment:
| Q |
19 |
catcgtatgatcagaaacttagaacaaatagttccaatcaaacattccaaattacatgtaccatgtgtggaaaaagaaacaataacataaatgattccaa |
118 |
Q |
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| T |
44954984 |
catcgtatgatcagaaacttagaacaaatagttccaatcaaacattccaaattacatgtaccatgtgtggaaaaagaaacaataacataaatgattccaa |
44954885 |
T |
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| Q |
119 |
attacatgaaacacaataaggaaatttgataaataaacataacataagcaatcaccatagatagcaatccgcacaagcacttaatgttttnnnnnnnnnn |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44954884 |
attacatgaaacacaataaggaaatttgataaataaacataacataagcaatcaccatagatagcaatccgcacaagcacttcatgttttaaaacaaaac |
44954785 |
T |
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| Q |
219 |
nnnnnnnnngtactacatatttgagaataaaccgaaattaatccgtgtgttacataaataactaagttacatgaattgatcctggaagaaaggcgttacc |
318 |
Q |
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| T |
44954784 |
aaa--------agtacatatttgagaataaaccgaaattaatccgtgtgttacataaataactaagttacatgaattgatcctggaagaaaggcgttacc |
44954693 |
T |
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