View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_14 (Length: 309)
Name: NF9561_low_14
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 27 - 299
Target Start/End: Original strand, 1543594 - 1543865
Alignment:
| Q |
27 |
ttctattttattttttgaaatgaagtagtttgctactgtggaaaataaagctagcaaattgaagttagccagtgggatgagaaaacgtggaggtaattat |
126 |
Q |
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| T |
1543594 |
ttctattttattttttgaaatgaagtagtttgctactgtggaaaataaagctagcaaattgaaattagccagtgggatgagaaaacctggaggtaattat |
1543693 |
T |
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| Q |
127 |
gctattttgatgcagtaaaaggaattaagaaaaaaggaagaaggttcaaactatgttgcaaacaccaaaagtattgaacaaaactaaacatgccaagttg |
226 |
Q |
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| T |
1543694 |
gctattttgatgcagtaaaaggaattaagaaaa-aggaagaaggttcaaactatgttgcaaacaccaaaagtattgaacaaaactaaacatgccaagttg |
1543792 |
T |
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| Q |
227 |
acttggcgagcaaacaaaccaaatgtgtaataatattttgaataagtcaatggttggacaatgtgatgtccat |
299 |
Q |
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| T |
1543793 |
acttggcgagcaaacaaaccaaatgtgtaataatattttgaataagtcaatggttggacaatgtgatgtccat |
1543865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 1547486 - 1547598
Alignment:
| Q |
48 |
gaagtagtttgctactgtggaaaata-aagctagcaaattgaagttagccagtgggatgagaaaacgtggaggtaattatgctattttgatgcagtaaaa |
146 |
Q |
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| T |
1547486 |
gaagtagtttgctattgtgggaaaaataagctagcaaattggaattagtccgttgga-gagaaaacatggaggtaattaagttattttgatgaagtaaaa |
1547584 |
T |
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| Q |
147 |
ggaattaagaaaaa |
160 |
Q |
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| T |
1547585 |
ggagttaagaaaaa |
1547598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 1547672 - 1547721
Alignment:
| Q |
207 |
aaactaaacatgccaagttgacttggcgagcaaacaaaccaaatgtgtaa |
256 |
Q |
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| T |
1547672 |
aaactgaacatgccatgttgacttggcgaacaaacaaaccaaatgtgtaa |
1547721 |
T |
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