View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_15 (Length: 263)
Name: NF9561_low_15
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 37576002 - 37575743
Alignment:
| Q |
1 |
gtataacggatagttaagaatagcagtaacaaaaagcatagaacaatgtaattaccgtagatccggcaaggttatggttgatcggtggaaatgaatcatg |
100 |
Q |
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| T |
37576002 |
gtataacggatagttaagaatagcagtaacaaaaagcatagaacaatgtaattaccgtagatccggcaaggttatggttgatcggtggaaatgaatcatg |
37575903 |
T |
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| Q |
101 |
atcaaacaacggggagcaaaagcaaatggcaagcaatgtgtcagtaaactgttgtgactgtaaaccattcatgatggatccatcagtcacaaaaacccat |
200 |
Q |
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| T |
37575902 |
atcaaacaatggggagcaaaagcaaatggcaagcaatgtgtcggtaaccttttgtgactgtaaaccattcatgatggatccatcagtcacaaaaacccat |
37575803 |
T |
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| Q |
201 |
tgcttcttttgctgacttgacgtataaacctttcccacatgcacaacaaatgcgacaaca |
260 |
Q |
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| T |
37575802 |
tgcttcttttgctgacttgacgtataaacctttcccacatgcacaacaaatgcgacaaca |
37575743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 37576053 - 37576009
Alignment:
| Q |
92 |
tgaatcatgatcaaacaacggggagcaaaagcaaatggcaagcaa |
136 |
Q |
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| T |
37576053 |
tgaatcatgatcaatcaatagggagcaaaagcaaatggcaagcaa |
37576009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 10439001 - 10438773
Alignment:
| Q |
25 |
agtaacaaaaagcatagaacaatgtaattaccgtagatccggcaaggttatggttgatcggtggaaatgaatcatgatcaaacaacggggagcaaaagca |
124 |
Q |
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| T |
10439001 |
agtaacaaaaggtatagaacaatgtaattaccgtagatccagcaaggttatggttgattggtggaaatgaatcatgatcaatcaatggggagcaaaagaa |
10438902 |
T |
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| Q |
125 |
aatggcaagcaatgtgtcagtaaactgttgtgactgtaaaccattcatgatggatccatcagtcacaaaaacccattgcttcttttgctgacttgacgta |
224 |
Q |
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||| |||||||||||||| ||||||| | ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
10438901 |
aatagcaagcaatgtgtccgtaaacttctctgattgtaaacctttcatgatcgatccatcagtcacaaaaacccattgcttcttttgctgacctgatgta |
10438802 |
T |
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| Q |
225 |
taaacctttcccacatgcacaacaaatgc |
253 |
Q |
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| T |
10438801 |
taagcctttccgacatgcacaacaaatgc |
10438773 |
T |
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