View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_17 (Length: 254)
Name: NF9561_low_17
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 34140897 - 34141145
Alignment:
| Q |
6 |
cgagtttggaggtgaaggaaggggagggctttggaaaaaagaggaagtggaagaaataaaagactttaaaagagaggattttgagaggttagattttctt |
105 |
Q |
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| T |
34140897 |
cgagtttgtaggtgaaggaaggggagggctttggaaaaaagaggaagtggaagaaatagaagactttaaaagagaggattttgagaggtaagattttctt |
34140996 |
T |
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| Q |
106 |
gatgggcattgctatatattgcgacggaaaatctcacgaaaacatcacgaccaactaaagaaaatacttaattaatttatgtgaaacctttctagttgtt |
205 |
Q |
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| T |
34140997 |
gatggacattgctatatattgcgacggaaaatctcacgaaaacatcacgaccaactaaagaaaatacttaattaatttatgtgaaacctttctagttctt |
34141096 |
T |
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| Q |
206 |
cttatttagagcacttgttaaggaaaccaaaattaatatgtttttcaaa |
254 |
Q |
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| T |
34141097 |
cttatttagagtacttgttaagaaaaccaaaattaatatgtttttcaaa |
34141145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 32858713 - 32858758
Alignment:
| Q |
6 |
cgagtttggaggtgaaggaaggggagggctttggaaaaaagaggaa |
51 |
Q |
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| T |
32858713 |
cgagtttggaggggaaggaaggggaggggtttggaaaaaaaaggaa |
32858758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 53620173 - 53620213
Alignment:
| Q |
6 |
cgagtttggaggtgaaggaaggggagggctttggaaaaaag |
46 |
Q |
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| T |
53620173 |
cgagtttggaggggaagggaggtgagggctttggaaaaaag |
53620213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 43496391 - 43496431
Alignment:
| Q |
6 |
cgagtttggaggtgaaggaaggggagggctttggaaaaaag |
46 |
Q |
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| T |
43496391 |
cgagtttggaggggaagaaaggggagggttttggaaaaaag |
43496431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 8990794 - 8990826
Alignment:
| Q |
7 |
gagtttggaggtgaaggaaggggagggctttgg |
39 |
Q |
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| T |
8990794 |
gagtttggaggggaaggaaggggagggctttgg |
8990826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 16625978 - 16625938
Alignment:
| Q |
6 |
cgagtttggaggtgaaggaaggggagggctttggaaaaaag |
46 |
Q |
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|||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
16625978 |
cgagtttggaggggaagggaggggagggttttggaaaaaag |
16625938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 39750042 - 39750082
Alignment:
| Q |
6 |
cgagtttggaggtgaaggaaggggagggctttggaaaaaag |
46 |
Q |
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| T |
39750042 |
cgagtttggaggggaaggaaggggaaggcttgggaaaaaag |
39750082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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