View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_18 (Length: 252)
Name: NF9561_low_18
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_18 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 41297636 - 41297396
Alignment:
| Q |
12 |
tggacatcatattcatatatctatctatagaatagaacttcaatttcaagatccccttataccagccgtggaagaaacaaactatataaatctccgagtt |
111 |
Q |
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| T |
41297636 |
tggacatcatattcatatatctatctatagaatagaacttcaatttcaagatccccttataccagccgtggaagaaacaaactatataaatctccaagtt |
41297537 |
T |
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| Q |
112 |
gaaaaaccattcggtcactccctcaaatcaatcataaaacaccgacacttgtgaataaaggtgtgtctagtgtcctacacatgccagtgtc-agacactg |
210 |
Q |
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| T |
41297536 |
gaaaaaccattcggtcactccctcaaatcaatcataaaacgccgaaacttgtgaatgaaggtgtgtctagtgtcctacacatg-cagtgtcttgatactg |
41297438 |
T |
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| Q |
211 |
gcacgcatgattacattatgtcattttctcaaattattatca |
252 |
Q |
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| T |
41297437 |
gcacacatgattacattatgtcattttctcaaattattatca |
41297396 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 13211303 - 13211335
Alignment:
| Q |
220 |
attacattatgtcattttctcaaattattatca |
252 |
Q |
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| T |
13211303 |
attaaattatgtcattttctcaaattattatca |
13211335 |
T |
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