View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9561_low_21 (Length: 238)

Name: NF9561_low_21
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9561_low_21
NF9561_low_21
[»] chr4 (11 HSPs)
chr4 (21-233)||(52982868-52983080)
chr4 (34-233)||(55619005-55619203)
chr4 (34-233)||(55626309-55626507)
chr4 (49-233)||(55657369-55657553)
chr4 (53-223)||(54860799-54860969)
chr4 (53-233)||(54630339-54630519)
chr4 (38-207)||(3671055-3671224)
chr4 (70-233)||(55663621-55663784)
chr4 (45-208)||(55637260-55637423)
chr4 (58-210)||(50190005-50190157)
chr4 (150-233)||(54630231-54630314)
[»] chr2 (1 HSPs)
chr2 (38-233)||(13403642-13403837)
[»] chr8 (2 HSPs)
chr8 (57-207)||(9891559-9891709)
chr8 (122-233)||(17220168-17220279)
[»] chr1 (1 HSPs)
chr1 (57-187)||(37308594-37308724)
[»] chr7 (1 HSPs)
chr7 (59-166)||(46153210-46153317)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 52982868 - 52983080
Alignment:
Q  21 agatcacagtctcgtctaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcat 120  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52982868 agatcacggtcttgtcgaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcat 52982967  T
Q  121 tgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaacctttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52982968 tgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctctcgtgttacaaaacctttt 52983067  T
Q  221 ctctgctactcca 233  Q
    ||| ||| |||||    
T  52983068 ctccgcttctcca 52983080  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 55619005 - 55619203
Alignment:
Q  34 gtctaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgact 133  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  55619005 gtctaccatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgact 55619104  T
Q  134 ctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctctgctactcca 233  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||    
T  55619105 ctgcaagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55619203  T

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Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 55626309 - 55626507
Alignment:
Q  34 gtctaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgact 133  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  55626309 gtctaccatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgact 55626408  T
Q  134 ctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctctgctactcca 233  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||    
T  55626409 ctgcaagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55626507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 49 - 233
Target Start/End: Original strand, 55657369 - 55657553
Alignment:
Q  49 gaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaat 148  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55657369 gaggtagtgtctcatcaacatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgat 55657468  T
Q  149 cttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctctgctactcca 233  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||    
T  55657469 cttttccaatccctcaacatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55657553  T

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Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 54860799 - 54860969
Alignment:
Q  53 tagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaatcttt 152  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||    
T  54860799 tagtgtctcgtcttcatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttt 54860898  T
Q  153 tccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctc 223  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  54860899 tccaatccctcagcatcctctatcatctgagcatacaagttgacatctcccgtgttaccaaagcttttctc 54860969  T

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Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 54630519 - 54630339
Alignment:
Q  53 tagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaatcttt 152  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||  |||  |||||||| | ||||||||||||||||    
T  54630519 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatccaagttttcaatcttt 54630420  T
Q  153 tccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctctgctactcca 233  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  54630419 tccaatcccttaacatcctctatcatctgagcatacaaattgacatctcccgtgttaccaaatcttttctctgcttctcca 54630339  T

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Target: chr4; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 3671055 - 3671224
Alignment:
Q  38 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgc 137  Q
    ||||| || ||||||||| |||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||    
T  3671055 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatgactctgc 3671154  T
Q  138 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgt 207  Q
    |||||| ||||||||||||||||||| || ||| |||||||| |||||||||| ||||||||||||||||    
T  3671155 aagtttccaatcttttccaatccctccgcgtcccctatcatcagagcatacaagttgacatctcccgtgt 3671224  T

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Target: chr4; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 55663621 - 55663784
Alignment:
Q  70 cttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatc 169  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||| ||||    
T  55663621 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatcttttccaatccctcaacatc 55663720  T
Q  170 ctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctctgctactcca 233  Q
     |||||||||||||||||||| ||||||||||| |||||||||||  ||||||| ||| |||||    
T  55663721 atctatcatctgagcatacaagttgacatctccggtgttacaaaagtttttctccgcttctcca 55663784  T

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Target: chr4; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 55637423 - 55637260
Alignment:
Q  45 cttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagtttt 144  Q
    |||||||||| |||||| ||||||||||  ||||||||||| || |||||| ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  55637423 cttggaggtactgtctcgtcttcatctttaaaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagtttt 55637324  T
Q  145 caatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgtt 208  Q
    |||||| | || | || ||||| ||   |||||||||| ||||||| |||||||||||||||||    
T  55637323 caatctctacccaaccgtcagcgtcaggtatcatctgaacatacaagttgacatctcccgtgtt 55637260  T

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Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 50190005 - 50190157
Alignment:
Q  58 tctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaa 157  Q
    ||||||||||||| | | |||||||||| || |||||| |||||||||||||||| ||||| | ||| |||||||| |||| |||||| ||||| || ||    
T  50190005 tctcatcttcatcgttcgaccaatatgtttcaagaattttaacagccttctcatatatttcttggttatcatgactttgcaggttttctatcttgtcaaa 50190104  T
Q  158 tccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttac 210  Q
    |||||||| | | ||||||||||||  |||||| ||| ||||| | |||||||    
T  50190105 tccctcagaaacatctatcatctgaaaatacaagttgtcatcttcagtgttac 50190157  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 54630314 - 54630231
Alignment:
Q  150 ttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctctgctactcca 233  Q
    ||||||||||||||| |||||| |||| ||||||||||||| ||||||||||| |||||||  |  |||||||||||| |||||    
T  54630314 ttttccaatccctcaacatcctttatcgtctgagcatacaagttgacatctccggtgttacttatgcttttctctgcttctcca 54630231  T

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Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 38 - 233
Target Start/End: Complemental strand, 13403837 - 13403642
Alignment:
Q  38 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgc 137  Q
    ||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  13403837 accatcgcctggtggtagtgtctcgtcttcatcttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcattgttgtcatgactctgc 13403738  T
Q  138 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctctgctactcca 233  Q
    | ||| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||| |||||    
T  13403737 aggttctcaatcttttccaatccctccgcctcatctatcatctgagcatacaagttgacatctcccgcgttaccaaagcttttctctgcttctcca 13403642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 9891709 - 9891559
Alignment:
Q  57 gtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcca 156  Q
    |||||| ||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9891709 gtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttcccataaatttcatagttgtcatgactctgcaagttttcaatcttttcca 9891610  T
Q  157 atccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgt 207  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||| ||||    
T  9891609 atccctcagcgtcctctatcatcagagcatacaagttgacatctcctgtgt 9891559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 17220279 - 17220168
Alignment:
Q  122 gttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttc 221  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||||    
T  17220279 gttgtcatgattctgcatgttatcaatcttttccaatccctcagcatcttctatcatttgagcatacaagttgacatctcccgtgttaccaaagcttttc 17220180  T
Q  222 tctgctactcca 233  Q
    || ||| |||||    
T  17220179 tccgcttctcca 17220168  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 37308594 - 37308724
Alignment:
Q  57 gtctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcca 156  Q
    ||||||||||| || |||||||| |||||||| |||||  | |||||||| |||||||| ||  |||||||||||||||| | ||| ||||| || ||||    
T  37308594 gtctcatcttcttcctccaaccagtatgtctcaagaatcttcacagccttttcataaatctctgtgttgtcatgactctggaggttctcaattttctcca 37308693  T
Q  157 atccctcagcatcctctatcatctgagcata 187  Q
    | ||||||||||| || |||||||| |||||    
T  37308694 acccctcagcatcatcaatcatctgggcata 37308724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 46153210 - 46153317
Alignment:
Q  59 ctcatcttcatcttccaaccaatatgtctcgagaattctaacagccttctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaat 158  Q
    |||||| || || |||||||| ||||||||||||||  | |||||||| |||||||| |||||||||||||||||||| | ||| ||||| || |||||     
T  46153210 ctcatcgtcttcctccaaccagtatgtctcgagaatcttcacagccttttcataaatctcattgttgtcatgactctggaggttctcaattttctccaaa 46153309  T
Q  159 ccctcagc 166  Q
    ||||||||    
T  46153310 ccctcagc 46153317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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