View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_23 (Length: 237)
Name: NF9561_low_23
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 37566782 - 37566966
Alignment:
| Q |
39 |
taaactcctcatggtattagtgttacattttttactctaaattcagtgttttaaaaactgaaccgaat--cgaatcagtgggactttttatcgtggttca |
136 |
Q |
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| T |
37566782 |
taaactcctcatggtattagtgttacattttttactctaaattcagtgttttaaaaactgaaccgaatatcgaatcagtgggactttttatcgtggttca |
37566881 |
T |
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| Q |
137 |
acctctttaaaccgtctagtttgtttcgggttttaaaacattgttgaaaacaagcagaggaattaaggatatattaccatgttaa |
221 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37566882 |
acctctttaaaccgtctagtttgattcgggttttaaaagattgttgaaaacaagcagaggaattaaggatatattaccatgttaa |
37566966 |
T |
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