View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9561_low_24 (Length: 232)

Name: NF9561_low_24
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9561_low_24
NF9561_low_24
[»] chr3 (8 HSPs)
chr3 (153-217)||(23068007-23068071)
chr3 (51-217)||(23071315-23071477)
chr3 (51-217)||(23074182-23074345)
chr3 (47-118)||(23067368-23067439)
chr3 (168-215)||(44083614-44083663)
chr3 (154-216)||(23086247-23086310)
chr3 (154-216)||(23089500-23089563)
chr3 (178-217)||(11388119-11388159)
[»] chr2 (1 HSPs)
chr2 (168-217)||(4398590-4398639)
[»] chr4 (3 HSPs)
chr4 (178-217)||(13096608-13096647)
chr4 (155-217)||(5932863-5932925)
chr4 (178-217)||(29584893-29584933)
[»] chr7 (2 HSPs)
chr7 (184-217)||(5334461-5334494)
chr7 (184-217)||(48193621-48193654)
[»] chr8 (1 HSPs)
chr8 (178-217)||(14522671-14522711)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 23068007 - 23068071
Alignment:
Q  153 tatatataagttctgtttgtttttcttcacatttttaagaaaaattgttattgtaattaatgtgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23068007 tatatataagttctgtttgtttttcttcacatttttaagaaaaattgttattgtaattaatgtgt 23068071  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 23071315 - 23071477
Alignment:
Q  51 ttggtttagtgtcattaagctgaccatgacccgtgactaactcaagttaatggacctattttatttcannnnnnnnnnnnnnagatactcttatggtctc 150  Q
    |||||||| || |||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||              | || |||||||||||||    
T  23071315 ttggtttactgccattaagctg-ccatg-cccgtgactatctcaagtcaatggacctattttatttcatttttttctttttaa-atcctcttatggtctc 23071411  T
Q  151 tatatatataagttctgtttgtttttcttcacattttt-aagaaaaattgttattgtaattaatgtgt 217  Q
    ||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23071412 tata--tataagttctgtttgtttttcttcacatttttcaagaaaaattgttattgtaattaatgtgt 23071477  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 23074182 - 23074345
Alignment:
Q  51 ttggtttagtgtcattaagctgaccatgacccgtgactaactcaagttaatggacctattttatttcannnnnnnnnnnnnnagatactcttatggtctc 150  Q
    |||||||| ||  |||||||||||||||||||||||||| ||||||| |||||||||||||||||| |              | || |||||||||||||    
T  23074182 ttggtttactgcaattaagctgaccatgacccgtgactatctcaagtcaatggacctattttattttatttttttctttttaa-atcctcttatggtctc 23074280  T
Q  151 tatatatataagttctgtttgtttttcttcaca-tttttaagaaaaattgttattgtaattaatgtgt 217  Q
    ||||||   ||||| | |||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  23074281 tatata---aagttttctttgtttttcttcatattttttaagaaaagttgttattgtaattaatgtgt 23074345  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 23067368 - 23067439
Alignment:
Q  47 ttggttggtttagtgtcattaagctgaccatgacccgtgactaactcaagttaatggacctattttatttca 118  Q
    ||||||||| || || |||||||||||||||||||||||| || ||||||| |||| |||||||||||||||    
T  23067368 ttggttggtctactgccattaagctgaccatgacccgtgattatctcaagtcaatgaacctattttatttca 23067439  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 44083614 - 44083663
Alignment:
Q  168 tttgtttttcttcacatttt--taagaaaaattgttattgtaattaatgt 215  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  44083614 tttgttttttttcacatttttttaagaaaaattgttattgtaattaatgt 44083663  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 23086310 - 23086247
Alignment:
Q  154 atatataagttctgtttgtttttcttcacatttt-taagaaaaattgttattgtaattaatgtg 216  Q
    ||||||||||||  |||||||||||||| | ||| || |||||||||||||| |||||||||||    
T  23086310 atatataagttccatttgtttttcttcaaaatttatacgaaaaattgttattataattaatgtg 23086247  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 23089500 - 23089563
Alignment:
Q  154 atatataagttctgtttgtttttcttc-acatttttaagaaaaattgttattgtaattaatgtg 216  Q
    |||||||||||| |||||||||||||| | |||| || |||||||||||||| |||| ||||||    
T  23089500 atatataagttccgtttgtttttcttcaaaatttatacgaaaaattgttattataatcaatgtg 23089563  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 11388119 - 11388159
Alignment:
Q  178 ttcacattt-ttaagaaaaattgttattgtaattaatgtgt 217  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  11388119 ttcacatttcttaagaaaaattgttagtgtaattaatgtgt 11388159  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 4398639 - 4398590
Alignment:
Q  168 tttgtttttcttcacatttttaagaaaaattgttattgtaattaatgtgt 217  Q
    |||| |||| |||||||||||||||||| |||||| ||||||||||||||    
T  4398639 tttgctttttttcacatttttaagaaaagttgttagtgtaattaatgtgt 4398590  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 13096647 - 13096608
Alignment:
Q  178 ttcacatttttaagaaaaattgttattgtaattaatgtgt 217  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  13096647 ttcacatttttaagaaaagttgttagtgtaattaatgtgt 13096608  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 5932863 - 5932925
Alignment:
Q  155 tatataagttctgtttgtttttcttcacatttttaagaaaaattgttattgtaattaatgtgt 217  Q
    ||||||||| |  ||| ||||| |||||||||||||||||| |||| | ||||||||||||||    
T  5932863 tatataagtcccctttattttttttcacatttttaagaaaagttgtcagtgtaattaatgtgt 5932925  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 29584893 - 29584933
Alignment:
Q  178 ttcacattt-ttaagaaaaattgttattgtaattaatgtgt 217  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  29584893 ttcacatttcttaagaaaaattgttagtgtaattaatgtgt 29584933  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 5334494 - 5334461
Alignment:
Q  184 tttttaagaaaaattgttattgtaattaatgtgt 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  5334494 tttttaagaaaaattgttagtgtaattaatgtgt 5334461  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 48193621 - 48193654
Alignment:
Q  184 tttttaagaaaaattgttattgtaattaatgtgt 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  48193621 tttttaagaaaaattgttagtgtaattaatgtgt 48193654  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 14522711 - 14522671
Alignment:
Q  178 ttcacattt-ttaagaaaaattgttattgtaattaatgtgt 217  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  14522711 ttcacatttcttaagaaaaattgttagtgtaattaatgtgt 14522671  T

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