View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_29 (Length: 216)
Name: NF9561_low_29
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 27983016 - 27983209
Alignment:
| Q |
1 |
agcctaacattgtagctttgtaatattcacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatccacatatacaattaaccatagaac |
100 |
Q |
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| T |
27983016 |
agcctaacattgtagctttgtaatattcacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatcaacatatacaatcaaccatagaac |
27983115 |
T |
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| Q |
101 |
tttcaatgtcaaagattttaatgaacaaaaactgaaatttaaaccattgaccataactacattccacggagtatttaccgctatgactttcattagt |
197 |
Q |
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| T |
27983116 |
tttcaatgtcaaggattttaatgaacaaacactgaaatttaaaccattgaccataactacattccacggag---ttaccgctatgactttcattagt |
27983209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28040318 - 28040511
Alignment:
| Q |
1 |
agcctaacattgtagctttgtaatattcacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatccacatatacaattaaccatagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
28040318 |
agcctaacattgtagctttgtaatattcacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatcaacatatacaatcaaccatagaac |
28040417 |
T |
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| Q |
101 |
tttcaatgtcaaagattttaatgaacaaaaactgaaatttaaaccattgaccataactacattccacggagtatttaccgctatgactttcattagt |
197 |
Q |
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| T |
28040418 |
tttcaatgtcaaggattttaatgaacaaacactgaaatttaaaccattgaccataactacattccacggag---ttaccgctatgactttcattagt |
28040511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 27862446 - 27862489
Alignment:
| Q |
53 |
agatttgatgtgtcaactcagatccacatatacaattaaccata |
96 |
Q |
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| T |
27862446 |
agatttgatgtgtcaactcagatccatatatatcattaaccata |
27862489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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