View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_31 (Length: 205)
Name: NF9561_low_31
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_31 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 51382934 - 51383138
Alignment:
| Q |
1 |
tagcttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtccgccatttaggctc |
100 |
Q |
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| T |
51382934 |
tagcttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtccgccatctaggctc |
51383033 |
T |
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| Q |
101 |
tcgaaagtggtactttccttctcacaatgcaaacttgtctttttattggtcgccttttcttgtgaggggtgttcaaagaaaaaacaaagggccaatttat |
200 |
Q |
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| T |
51383034 |
tagaaagtggtactttccttctcacaatgcaaacttgtctttttattggtcgccttttcttgtgaggggtgttcaaagaaaaaacagagggccaatttat |
51383133 |
T |
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| Q |
201 |
aatac |
205 |
Q |
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||||| |
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| T |
51383134 |
aatac |
51383138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 11807731 - 11807528
Alignment:
| Q |
5 |
ttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtccgccatttaggctc---t |
101 |
Q |
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| T |
11807731 |
ttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcatataggctctatt |
11807632 |
T |
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| Q |
102 |
cgaaagtggtactttccttctcacaatgcaaacttgtctttttattggtcgccttttcttgtgaggggtgttcaaagaaaaaacaaagggccaatttata |
201 |
Q |
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| T |
11807631 |
gggaggtggtattttccttcttacaatgcaaacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattata |
11807532 |
T |
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| Q |
202 |
atac |
205 |
Q |
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| T |
11807531 |
atac |
11807528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 44248817 - 44248635
Alignment:
| Q |
1 |
tagcttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtccgccatttaggctc |
100 |
Q |
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| T |
44248817 |
tagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtccaccatataggctc |
44248718 |
T |
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| Q |
101 |
---tcgaaagtggtactttccttctcacaatgcaaacttgtctttttattggtcgccttttcttgtgaggggtgttcaaagaa |
180 |
Q |
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| T |
44248717 |
tgatggaaggtggtactttccttcttacaacgcaaacttgacagcctattggtcaccttttcttgtgaagggtgatcaaagaa |
44248635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 5e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 15283806 - 15283929
Alignment:
| Q |
64 |
ctgcttcaaaacctaaacgtgtccgccatttaggctctcg---aaagtggtactttccttctcacaatgcaaacttgtctttttattggtcgccttttct |
160 |
Q |
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| T |
15283806 |
ctgcttcaaaacctaaacctgtccaccatttaggctctgatgcaaagtggtattttccttctcacaatgcaaacttgacattctattggtcaccatttct |
15283905 |
T |
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| Q |
161 |
tgtgaggggtgttcaaagaaaaaa |
184 |
Q |
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| T |
15283906 |
tgtgaagggtgatcaaagaaaaaa |
15283929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 15262257 - 15262417
Alignment:
| Q |
4 |
cttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtccgccatttaggctctcg |
103 |
Q |
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| T |
15262257 |
cttttgttggagattctttagctagaaaccaatttgagtctcttctttgcatgttatcaactgtttcaaaacctaaacctgtccaccataaaggttcaca |
15262356 |
T |
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| Q |
104 |
aaagtggtactttccttctcacaatgcaaacttgtctttttattggtcgccttttcttgtg |
164 |
Q |
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| T |
15262357 |
ttggtggcattttccttctcacaatgcaacattatctgtgtattggtcgccatttcttgtg |
15262417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15274548 - 15274608
Alignment:
| Q |
1 |
tagcttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatc |
61 |
Q |
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| T |
15274548 |
tagcttttgttggagactctttagctaggaaccaaatagagtcccttgtttgcttattatc |
15274608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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