View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_4 (Length: 505)
Name: NF9561_low_4
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 1543416 - 1542948
Alignment:
| Q |
19 |
catcactttgtacaccattttaataattacattatccaactcatagtctagaatccattagaacgctgagagtaacgcacaagccttgcattcaactgtt |
118 |
Q |
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| T |
1543416 |
catcactttgtaccccattttgataattacattatccaactcatagtctagaatccattagaacactgagagtaacgcacaagccttgcattcaactgtt |
1543317 |
T |
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| Q |
119 |
cgaaaatgatgatgagtgcataacgccacgcacaagaagggcacggctccttacagtcttgtcatgtaatttatttgcaattaagttaatctaagtttta |
218 |
Q |
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| T |
1543316 |
cgaaaatgatgatgagtgcataacaccacgcacaagaagggcacggctccttacagtcttgtcatgtaatttatttgcaattaagttaatctaagtttta |
1543217 |
T |
|
| Q |
219 |
acgtacttaacattactattggtgaacaatataaacaacacttaaagaaaagcacacaagttttattgttattcagaataaattttgaaatattatcatg |
318 |
Q |
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| T |
1543216 |
acgtacttaacattactattggtgaacaatataaacaacacttaaagaaaagcacacaagttttattgttattcagaataaattttgaaatattatcatg |
1543117 |
T |
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| Q |
319 |
ggttaggatatattaagtaatgaaattattttctcaaaagtcagatcttttcagcagacacattcatcggatagaggatggttctctgtcagcagtcacc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1543116 |
ggttaggatatattaagtaatgaaattattttctcaacagtcagatcttttcagcagacacattcatcggatagaggatggttctctgtcagcattcacc |
1543017 |
T |
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| Q |
419 |
aattctctctttatagtttccttcacaactctcatagcaggaagatggacccatctttcattctagata |
487 |
Q |
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| T |
1543016 |
aattctctctttatagtttccttcacaactctcatagcaggaagatggacccatctttcattctagata |
1542948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 1547289 - 1547194
Alignment:
| Q |
23 |
actttgtacaccattttaataattacattatccaactcatagtctagaatccattagaacgctgagagtaacgcacaagccttgcattcaactgtt |
118 |
Q |
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||||| ||||||| || || ||||||||| |||||||||| ||| ||| |||| |||| ||| ||||||| |||||||||| ||||||||||||| |
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| T |
1547289 |
actttatacaccacttcaacaattacattttccaactcatggtcaagagtccactagagcgccgagagtatggcacaagcctcgcattcaactgtt |
1547194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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