View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_5 (Length: 439)
Name: NF9561_low_5
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 197 - 422
Target Start/End: Original strand, 48456534 - 48456763
Alignment:
| Q |
197 |
acacaaaactatccatccttcgtactgttgttctacattaatcatacttaagcagcgttgagtttagaatatcatctaatcaaa-----ctaattttact |
291 |
Q |
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| T |
48456534 |
acacaaaactatccatccttcgtactgttgttctacattaatcatacttaagcagcgttgagtttagaatatcatctaatcaaattaaactaattttact |
48456633 |
T |
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| Q |
292 |
tgcccaccaaacttgtcaaagagcatgtacgagaggaaatataatcgtgagcacacagccgtccatgaccctttggattaatttattcaattattattac |
391 |
Q |
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| T |
48456634 |
tggccaccaaacttgtcaaagaggatgtaa-acagtaaatataatcttgagcacacagccgtccatgaccctttggattaatttattcaattattattac |
48456732 |
T |
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| Q |
392 |
aattcggtttaggaacaaacaacaaaataca |
422 |
Q |
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| T |
48456733 |
aattcggtttaggaacaaacaacaaaataca |
48456763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 48456463 - 48456502
Alignment:
| Q |
157 |
tttattttatcatattatacgtagaatatgttccccaatt |
196 |
Q |
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| T |
48456463 |
tttattttatcatattatacgtagaatatgttccccaatt |
48456502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 8413448 - 8413312
Alignment:
| Q |
5 |
ggagaagcaaagggaacaaattcagaaggatcgtcgcggtggcggtggcggtggcggt------tttgatcaaacatgattttacttaataatttaaagg |
98 |
Q |
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| T |
8413448 |
ggagaagcaaagggaacaaattcagaaggatcgtcgcggtggcggtggcggtggcggtggcggttttgatcaaacatgattttacttaataatttaaagg |
8413349 |
T |
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| Q |
99 |
taattaatgcatttgattgaatccttttgttgttaat |
135 |
Q |
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| T |
8413348 |
taattaatgcattttattgaatccttttgttgttaat |
8413312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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