View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9561_low_9 (Length: 388)
Name: NF9561_low_9
Description: NF9561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9561_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 40573625 - 40573995
Alignment:
| Q |
1 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgatgttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573625 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgacgttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttaa |
40573724 |
T |
|
| Q |
101 |
aacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcattgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573725 |
aacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcattgatt |
40573824 |
T |
|
| Q |
201 |
ggtggaagatgattagttgatattaatattcaggattagatgttaatatatcttcagtataatagtgttgtcgtatatgttgtatttccccctgtattag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573825 |
ggtggaagatgattagttgatattaatattcaggattagatgttaatatatcttcagtataatagtgttgtcgtatatgttgtatttccccctgtattag |
40573924 |
T |
|
| Q |
301 |
tccattggacatgatatttatatttgtgtcgatgtaaatatgggatttgcaagtgaacttgtgttatgctt |
371 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40573925 |
tccattggacatgatatttatatttgtctcgatgtaaatatgggatttccaagtgaacttgtgttatgctt |
40573995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 40569024 - 40569394
Alignment:
| Q |
1 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgatgttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttat |
100 |
Q |
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|||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
40569024 |
tgaaagaagtggcaatggaattagagggaatattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttgcttaa |
40569123 |
T |
|
| Q |
101 |
aacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcattgatt |
200 |
Q |
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|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
40569124 |
aacagcacggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgatt |
40569223 |
T |
|
| Q |
201 |
ggtggaagatgattagttgatattaatattcaggattagatgttaatatatcttcagtataatagtgttgtcgtatatgttgtatttccccctgtattag |
300 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||| | |
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| T |
40569224 |
ggtggaagatgattggttgatattagtattcaggattagatgtgaatctatcttcattataatagtgttgtcgtatatgttgtattttcccctgtattgg |
40569323 |
T |
|
| Q |
301 |
tccattggacatgatatttatatttgtgtcgatgtaaatatgggatttgcaagtgaacttgtgttatgctt |
371 |
Q |
| |
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|| |||| |||||||||| |||||||| |||||||||| || |||||||||| ||| ||||||||||||| |
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|
| T |
40569324 |
tctattgcacatgatattcatatttgtatcgatgtaaaaataggatttgcaattgagtttgtgttatgctt |
40569394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 40580082 - 40580369
Alignment:
| Q |
1 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgatgttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| |||| |||||||||||| ||||||||||||| | |
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| T |
40580082 |
tgaaagaagtggcaatggaacttgagggaatattagttattgaagagttccgttggggaagtgactatttgtcttcagaagagactgaaaacttgctcaa |
40580181 |
T |
|
| Q |
101 |
aacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcattgatt |
200 |
Q |
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||||||| || | ||||| || |||||| |||||||||||| |||||||||| || || ||||||||||||||||||||||| || |||| |
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| T |
40580182 |
aacagcagaatccgtaaaaaatgttcaagatggtattggtggaagtgatattaattcttctggttcatatagcttaaaccagatttcgat---atcgatt |
40580278 |
T |
|
| Q |
201 |
ggtggaagatgattagttgatat---taatattcaggattagatgttaatatatcttcagtataatagtgttgtcgtatatgttgtatttc |
288 |
Q |
| |
|
|||||||||||||| | ||||| ||||| ||| | ||| |||||||| |||||||| |||||| ||||||| |||| || |||||||| |
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| T |
40580279 |
ggtggaagatgattgatggatattaataatactcatggttatatgttaatctatcttcactataattgtgttgtagtatttgatgtatttc |
40580369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40602580 - 40602627
Alignment:
| Q |
1 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagagc |
48 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||||||| |
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| T |
40602580 |
tgaaagaagtggcagtggaactagagggaatattagttattgaagagc |
40602627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40591930 - 40591976
Alignment:
| Q |
1 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagag |
47 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| |||||||| |
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|
| T |
40591930 |
tgaaagaagtggcaatggaactggaaggaatattagttattgaagag |
40591976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 40602723 - 40602775
Alignment:
| Q |
170 |
tagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgata |
222 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||| |||||||||||||| |
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|
| T |
40602723 |
tagcttaaagcagattaggatatcattgattggtggaatatgattagttgata |
40602775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 40582217 - 40582288
Alignment:
| Q |
136 |
ttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaa |
207 |
Q |
| |
|
|||| |||||||| |||||||||| ||| || ||||| || |||| ||||| ||||||||||||||||||| |
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| T |
40582217 |
ttggcggaagtggaattaattcttctgattctgatagcatataccaaatttcaatgtcattgattggtggaa |
40582288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40598532 - 40598578
Alignment:
| Q |
1 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagag |
47 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| ||||||| |
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|
| T |
40598532 |
tgaaagaagtggcaatgggactagagggaatattagttactgaagag |
40598578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 2014571 - 2014505
Alignment:
| Q |
154 |
attcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttga |
220 |
Q |
| |
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|||||| |||||| || ||| ||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
2014571 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
2014505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2014712 - 2014652
Alignment:
| Q |
1 |
tgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgatgttggggaag |
61 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||| |
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|
| T |
2014712 |
tgaaagaagtggcagcggaactggagggaatattagttattgaagagcaccgttggggaag |
2014652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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