View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9562_1 (Length: 630)
Name: NF9562_1
Description: NF9562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9562_1 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Complemental strand, 42930199 - 42929751
Alignment:
| Q |
14 |
gtctaaaagaagattcgcgctcaggtagtcaagagtctagacatcgatggtcattcaatcaagatcagacaatcttgaaacagatgtagactatactttt |
113 |
Q |
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|||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
42930199 |
gtctaaaagaggattcgcactcaggtagccaagagtctagatatcgatggtcattcagtcaagatcagataatcttgaaacagatgtaaactatactttt |
42930100 |
T |
|
| Q |
114 |
gattttaatattcaaaatatcattcaactatgtgaatgtgaagaatctctcagcgcaaagaaccaaatacgtaagcaaaagagggaaattaacatgaaaa |
213 |
Q |
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| T |
42930099 |
gattttaatattcaaaatatcattcaactatgtgaatgtgaagaatctgtcagcgcaaagaaccaaatacgtaagcaaaagagggaaattaacatgaaaa |
42930000 |
T |
|
| Q |
214 |
ataatgaaacaaaaaatgttactttatgatacactactactaatatttggtatacataattaaaatcattcccctcaaccttaaattaagtacttgaaga |
313 |
Q |
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| T |
42929999 |
ataatgaaacaaaaaatgttactttatgatacactactactactatttggtatacataattaaaatcattcccctcaaccttaaattaagtacttgaaga |
42929900 |
T |
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| Q |
314 |
cgaagatgaagttgaagcttgagtttgtgaagcttcaacttcatcttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagta |
413 |
Q |
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| T |
42929899 |
cgaagatgaagttgaagcttgagtttgtgaagcttcaacttcatcttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagta |
42929800 |
T |
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| Q |
414 |
tcaacctcttcctcgcgagcttccgaacaagaaacacaacgagtgctat |
462 |
Q |
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| T |
42929799 |
tcaacctcttcctcgcgagcttccgaacaagaaacacaacgagtgctat |
42929751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 559 - 612
Target Start/End: Complemental strand, 42929654 - 42929601
Alignment:
| Q |
559 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929654 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgat |
42929601 |
T |
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