View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9562_3 (Length: 517)
Name: NF9562_3
Description: NF9562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9562_3 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 517
Target Start/End: Complemental strand, 27521439 - 27520936
Alignment:
| Q |
12 |
atgaatccgattttttcatcttttatgttgttgttgctaatatctcatgaaaaagatttcaaatgcctttctctaattaattctaatttcttttacattt |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521439 |
atgaatccgattttttcatcttttctgttgttgttgctaatatctcgtgaaaaagatttcaaatgcctttctctaattaattctaatttcttttacattt |
27521340 |
T |
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| Q |
112 |
ttcattcaatacctattagagtaatatgtattttaggtgagcaattcgtcgagtgagatgaatccaannnnnnnnnnnnnnnnnnctgttgttgttgcta |
211 |
Q |
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| T |
27521339 |
tccattcaatacctattagagtcatatgtattttaggtgagcaatttttctaa-gatatgaatccaattttttcattttttttttctgttgttgttgcta |
27521241 |
T |
|
| Q |
212 |
atatctcatgtaaaattttcaaatgcctttctctaattaactgtgatctcttttacatttttcatttagtaccaattagagtcatatgtattttatgtga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27521240 |
atatctcatgtaaaattttcaaatgcctttctctaattaactgtgatctcttttacatttttcatttagtaccaattagagtcatatgtatgttatgtga |
27521141 |
T |
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| Q |
312 |
gcaatattttcttataaataaatttaattatgcgttttcttgctacgatatatttctccaatttcatattgttcatattttaggtccgcaatattttccc |
411 |
Q |
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| T |
27521140 |
gcaatattttcttataaataaatttaattatgctttttcttgctacgatatatttctccaatttcatattgtccatattttaggtccgcaatatttcccc |
27521041 |
T |
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| Q |
412 |
ataaataaatttattctactttaattcttttgaaggggctctacttcaattatcatacgttttcgtccaacgatatactacttcaatttcatattatcca |
511 |
Q |
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| T |
27521040 |
ataaataaatttattttactttaattcttttgaaggggctctactttaattatcatac-ttttcgtccaacgatatattacttcaatttcatattgtcca |
27520942 |
T |
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| Q |
512 |
tgttgt |
517 |
Q |
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|||||| |
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| T |
27520941 |
tgttgt |
27520936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 27521565 - 27521452
Alignment:
| Q |
40 |
tgttgttgctaatatctcatgaaaaagatttcaaatgcctttctctaattaattctaatttcttttacatttttcattcaatacctattagagtaatatg |
139 |
Q |
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| T |
27521565 |
tgttgttgctaatatctcatgaaaaa-atttcaaatgtctttctctaattaa--ctgatttcttttacatttttcattcaatacctattagagtcatatg |
27521469 |
T |
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| Q |
140 |
tattttaggtgagcaat |
156 |
Q |
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| T |
27521468 |
tattttaggtgagcaat |
27521452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 27521565 - 27521445
Alignment:
| Q |
201 |
tgttgttgctaatatctcatgtaaaattttcaaatgcctttctctaattaactgtgatctcttttacatttttcatttagtaccaattagagtcatatgt |
300 |
Q |
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||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| || |||||||||||||||||| | |||| ||||||||||||||| |
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| T |
27521565 |
tgttgttgctaatatctcatgaaaaaatttcaaatgtctttctctaattaactg--atttcttttacatttttcattcaatacctattagagtcatatgt |
27521468 |
T |
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| Q |
301 |
attttatgtgagcaatattttct |
323 |
Q |
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|||||| |||||||||||||||| |
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| T |
27521467 |
attttaggtgagcaatattttct |
27521445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 27521938 - 27521802
Alignment:
| Q |
17 |
tccgattttttcatctttta-tgttgttgttgctaatatctcatgaaaaagatttcaaatgcctttctctaattaattctaatttcttttacatttttca |
115 |
Q |
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| T |
27521938 |
tccgattttttcatttttttctgttgttgttgcaaatatctcatg-taaattgttcaaatgcctttctctaatcaactctaatttcgtttacattttgca |
27521840 |
T |
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| Q |
116 |
ttcaatacctattagagtaatatgtattttaggtgagc |
153 |
Q |
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| T |
27521839 |
gtcaatacctattagattcatatgtattttaggtgagc |
27521802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 27521918 - 27521802
Alignment:
| Q |
197 |
ctgttgttgttgctaatatctcatgtaaaattttcaaatgcctttctctaattaactgtgatctcttttacatttttcatttagtaccaattagagtcat |
296 |
Q |
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||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||| | || || |||||||||| || | | |||| |||||| |||| |
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| T |
27521918 |
ctgttgttgttgcaaatatctcatgtaaattgttcaaatgcctttctctaatcaactctaatttcgtttacattttgcagtcaatacctattagattcat |
27521819 |
T |
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| Q |
297 |
atgtattttatgtgagc |
313 |
Q |
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|||||||||| |||||| |
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| T |
27521818 |
atgtattttaggtgagc |
27521802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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