View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9562_4 (Length: 473)
Name: NF9562_4
Description: NF9562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9562_4 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 45139508 - 45139082
Alignment:
| Q |
1 |
agaagaagaagaaatttgagggcagctgccttcactaccttcatattgtgtctagtttttctaaataacttactcnnnnnnnaaagattgaataacttnn |
100 |
Q |
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| T |
45139508 |
agaagaagaagaaatttgagggcagctgccttcactaccttcatattttgtctagtttttctaaataacttactctttttttaaagattgaataacttaa |
45139409 |
T |
|
| Q |
101 |
nnnnntttagcacccatgaaaattaattgttgccccatctaaattgactacttttaaaaagtagaagatatattatgaactacctaatagtgtattgctt |
200 |
Q |
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| T |
45139408 |
aaaaatttatcacccatgaaaattaattgttgccccatctaaatttactacttttaaaaagtagaagatatattatgaactacctaatagtgtattgctt |
45139309 |
T |
|
| Q |
201 |
ccgaagttgtatttgattttccgtctgacaactataacaattgaaaatagtttatttctagagtaaatgatcattttgattattgaatgtgtcatgtgtt |
300 |
Q |
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| T |
45139308 |
ccgaagttgtatttgattttccgtgtgacaactataacaattgaaaatagtttatttctagagtaaatgatcattttgattattgaatgtgtcatgtgtt |
45139209 |
T |
|
| Q |
301 |
attgttaaagactctaaaattaacaaatgtcatgatatgattggattacaagcaaagtctagaaggtcacactttgttcttcagacattcacaaggagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |
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| T |
45139208 |
attgttaaagactctaaaattaacaaatgtcatgatatgattggattacaagcaaagtctaggaggtcacactttgttcttgagacattcataaggagaa |
45139109 |
T |
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| Q |
401 |
aagtcactatactttttgtttatgtta |
427 |
Q |
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|||| ||||||||| |||||||||||| |
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| T |
45139108 |
aagtgactatacttcttgtttatgtta |
45139082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 427 - 473
Target Start/End: Complemental strand, 45124785 - 45124739
Alignment:
| Q |
427 |
attgaataataatagcattgaacacgtgtttataagtgagacaattc |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45124785 |
attgaataataatagcattgaacacgtgtttataagtgagacaattc |
45124739 |
T |
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