View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9562_5 (Length: 365)
Name: NF9562_5
Description: NF9562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9562_5 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25468519 - 25468752
Alignment:
| Q |
1 |
acatccttgattgtcaaaacaattgtcagctcatctttgaatggtcaattttaacgtcaaggacttaattggttaacataggtatacatccagggactat |
100 |
Q |
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| T |
25468519 |
acatccttgattgtcaaaacaattgtcagctcatcttttaatggtcaattttaacgtcaaggacttaattggttaacataggtatacattcagggactat |
25468618 |
T |
|
| Q |
101 |
tttacattttatcccgagtagggaccattttaacaacaaaattcataatcagaaactaaaatggctgtatcccttaataacaaatgaggtctatctaaca |
200 |
Q |
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||||||||||||||||||||||||||||||| ||| || ||| |||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
25468619 |
tttacattttatcccgagtagggaccattttgacagcacaatgcatagtcagagactaaaatggttgtattccttaataacaaatgaggtctatctaaca |
25468718 |
T |
|
| Q |
201 |
aatcagttatactatttttaaagggttgaatgca |
234 |
Q |
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||||| ||||||| |||||||||||||||||||| |
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| T |
25468719 |
aatcacttatactttttttaaagggttgaatgca |
25468752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 258 - 359
Target Start/End: Original strand, 25468923 - 25469025
Alignment:
| Q |
258 |
agaactagctaacaagccttgcaaagaaatatttcatttcattctagcaaatacttcaaagtctaattcgatggttta-ttttttgttgcaattcagtgt |
356 |
Q |
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| T |
25468923 |
agaactagctaacaagccttgcaaagaaatatttcatttcattctagcaaatacttcaaagtctaatttgatggtttatttttttgttgcaattcagtgt |
25469022 |
T |
|
| Q |
357 |
gat |
359 |
Q |
| |
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||| |
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| T |
25469023 |
gat |
25469025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 25473667 - 25473811
Alignment:
| Q |
62 |
gacttaattggttaacataggtatacatccagggactattttacattttatcccgagt-agggaccattttaacaacaaaattcataatcagaaactaaa |
160 |
Q |
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||||||||||| ||||| ||||| ||||| |||||||||||||||||||||| |||| |||||||||| | ||| | | || ||| |||| || ||| |
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| T |
25473667 |
gacttaattggctaacagaggtacacatctagggactattttacattttatcttgagtcagggaccattgtgacagcgatatgcatggtcagggaccaaa |
25473766 |
T |
|
| Q |
161 |
atggctgtatcccttaataacaaatgaggtctatctaacaaatca |
205 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
25473767 |
atggttgtatcccttaataacaaatgaggtctatttaacaaatca |
25473811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 258 - 359
Target Start/End: Original strand, 25477233 - 25477336
Alignment:
| Q |
258 |
agaactagctaacaagccttgcaaagaaatatttcatttcattctagcaaatacttcaaagtctaattcgatgg--tttattttttgttgcaattcagtg |
355 |
Q |
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|||||| ||||||||||||| ||||||||||| | |||| |||||| |||| ||||||||||||||| ||||| ||| ||||||||||||||| |||| |
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| T |
25477233 |
agaacttgctaacaagccttacaaagaaatatgttttttctttctagaaaatgcttcaaagtctaatttgatgggtttttttttttgttgcaatttagtg |
25477332 |
T |
|
| Q |
356 |
tgat |
359 |
Q |
| |
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|||| |
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|
| T |
25477333 |
tgat |
25477336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 32660898 - 32660831
Alignment:
| Q |
293 |
atttcattctagcaaatacttcaaagtctaattcgatg-gtttattttttgttgcaattcagtgtgat |
359 |
Q |
| |
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|||| |||||||||||| ||||| |||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
32660898 |
attttattctagcaaatggttcaacgtctaatttgatgagtttcttttttgttgcaattcagtgtgat |
32660831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 25468915 - 25468950
Alignment:
| Q |
226 |
ttgaatgcataactagctaacaagccttgcaaagaa |
261 |
Q |
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| T |
25468915 |
ttgaatgcagaactagctaacaagccttgcaaagaa |
25468950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 7626309 - 7626381
Alignment:
| Q |
47 |
aattttaacgtcaaggacttaattggttaacataggtatacatccagggactattttacattttatcccgagt |
119 |
Q |
| |
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||||| ||||||||||| | |||||||||||| | ||||||||||| ||||||||||||||||||| |||| |
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| T |
7626309 |
aatttaaacgtcaaggattaaattggttaacagaagtatacatccaaaaactattttacattttatcctgagt |
7626381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 17582850 - 17582915
Alignment:
| Q |
265 |
gctaacaagccttgcaaagaaatatttcatttcattctagcaaatacttcaaagtctaattcgatg |
330 |
Q |
| |
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||||||||||||| |||| |||| ||| |||| |||||| ||||| |||||||||||||| |||| |
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| T |
17582850 |
gctaacaagccttacaaataaatcttttattttattctaacaaatggttcaaagtctaatttgatg |
17582915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 37576518 - 37576566
Alignment:
| Q |
312 |
ttcaaagtctaattcgatggttta-ttttttgttgcaattcagtgtgat |
359 |
Q |
| |
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|||||||||||||| |||| ||| |||||||||||||||||||||||| |
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| T |
37576518 |
ttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgat |
37576566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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