View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9563_high_12 (Length: 320)

Name: NF9563_high_12
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9563_high_12
NF9563_high_12
[»] scaffold0004 (2 HSPs)
scaffold0004 (44-304)||(123672-123935)
scaffold0004 (62-103)||(92899-92940)
[»] chr1 (9 HSPs)
chr1 (62-104)||(40258873-40258915)
chr1 (62-103)||(27965941-27965982)
chr1 (62-102)||(1486646-1486686)
chr1 (62-102)||(16297223-16297263)
chr1 (61-103)||(113369-113411)
chr1 (62-103)||(7918155-7918196)
chr1 (62-103)||(22947807-22947848)
chr1 (61-89)||(38078616-38078644)
chr1 (62-102)||(42359391-42359431)
[»] chr8 (9 HSPs)
chr8 (62-103)||(36450695-36450736)
chr8 (60-103)||(16641910-16641953)
chr8 (68-103)||(25566913-25566948)
chr8 (62-104)||(29447039-29447081)
chr8 (62-103)||(8343044-8343085)
chr8 (62-103)||(8343404-8343445)
chr8 (70-103)||(11833935-11833968)
chr8 (62-103)||(13436911-13436952)
chr8 (62-102)||(44067604-44067644)
[»] chr4 (12 HSPs)
chr4 (62-103)||(17425348-17425389)
chr4 (68-103)||(28964189-28964224)
chr4 (62-104)||(3947701-3947743)
chr4 (69-103)||(16073478-16073512)
chr4 (70-100)||(21945588-21945618)
chr4 (62-103)||(17876243-17876284)
chr4 (62-103)||(18513176-18513217)
chr4 (1-34)||(20633512-20633545)
chr4 (62-103)||(23292927-23292968)
chr4 (62-103)||(47264074-47264115)
chr4 (62-102)||(22440559-22440599)
chr4 (63-103)||(42640602-42640642)
[»] chr3 (9 HSPs)
chr3 (62-103)||(40993276-40993317)
chr3 (70-103)||(11252061-11252094)
chr3 (62-103)||(20503542-20503583)
chr3 (62-91)||(25775584-25775613)
chr3 (66-103)||(28812607-28812644)
chr3 (62-103)||(34185053-34185094)
chr3 (1-30)||(35994738-35994767)
chr3 (63-103)||(3730109-3730149)
chr3 (62-102)||(24204983-24205023)
[»] chr6 (6 HSPs)
chr6 (44-103)||(9911483-9911543)
chr6 (64-104)||(17341621-17341661)
chr6 (68-103)||(5732475-5732510)
chr6 (62-103)||(3209476-3209517)
chr6 (66-103)||(4878023-4878060)
chr6 (62-102)||(26178620-26178660)
[»] chr2 (6 HSPs)
chr2 (62-102)||(19942342-19942382)
chr2 (68-103)||(19536362-19536397)
chr2 (62-91)||(10535698-10535727)
chr2 (62-103)||(37419831-37419872)
chr2 (62-102)||(2438661-2438701)
chr2 (63-103)||(22084757-22084797)
[»] scaffold0103 (1 HSPs)
scaffold0103 (61-104)||(51899-51942)
[»] scaffold0009 (1 HSPs)
scaffold0009 (44-92)||(188455-188507)
[»] chr5 (8 HSPs)
chr5 (61-103)||(14873598-14873640)
chr5 (68-109)||(10298633-10298674)
chr5 (70-103)||(15086563-15086596)
chr5 (62-103)||(27932312-27932353)
chr5 (62-103)||(28588615-28588656)
chr5 (62-103)||(38464314-38464355)
chr5 (62-103)||(42893437-42893478)
chr5 (61-102)||(43001881-43001922)
[»] chr7 (7 HSPs)
chr7 (62-103)||(1433536-1433577)
chr7 (62-103)||(5409772-5409813)
chr7 (68-105)||(11272529-11272566)
chr7 (62-103)||(21880229-21880270)
chr7 (66-103)||(29763130-29763167)
chr7 (62-103)||(35862028-35862069)
chr7 (71-103)||(23128604-23128636)
[»] scaffold0007 (1 HSPs)
scaffold0007 (62-102)||(225199-225239)


Alignment Details
Target: scaffold0004 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 123672 - 123935
Alignment:
Q  44 acaagtgtcggtgtcttaacaccaggacacgcctaatccgaggagtgtctatgcttcataagagtactnnnnnnnn---tataaattttttgtttgttta 140  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||           |||||||||||||||||||||    
T  123672 acaagtgtcggtgtcttaacatcaggacacgcctaatccgaggagtatctatgcttcataagagtactaaaaagtaaaatataaattttttgtttgttta 123771  T
Q  141 tatgcagccaggcttaactggaggtagtggtgattcttatgttagacacatgttaatcagagctcgaaataaaggatggcgtgttgttgtgttcaatagt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  123772 tatgcagccaggcttaactggaggtagtggtgattcttatgttagacacatgttaatcagagctcgaaataaaggatggcgtgttgttgtgttcaatagt 123871  T
Q  241 cgtggctgtggaggtagccctgttactactcctcaggtgaatcattttcttctaaattgcatct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  123872 cgtggctgtggaggtagccctgttactactcctcaggtgaatcattttcttctaaattgcatct 123935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 92899 - 92940
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  92899 acacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 40258915 - 40258873
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcataa 104  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  40258915 acaccaggacacgcctaatccgaggagtgtccatgcttcataa 40258873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 27965982 - 27965941
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  27965982 acaccgggacacgcctaatccgaggagtgtccatgcttcata 27965941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 1486686 - 1486646
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  1486686 acaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 16297263 - 16297223
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  16297263 acaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 113369 - 113411
Alignment:
Q  61 aacaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||| ||||||||||||||||||||||| | ||||||||||    
T  113369 aacaccgggacacgcctaatccgaggagtgcccatgcttcata 113411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 7918196 - 7918155
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||| ||||||||||||||||||  |||||||||    
T  7918196 acaccaggacacacctaatccgaggagtgtccgtgcttcata 7918155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 22947807 - 22947848
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  22947807 acacctggacacgcctaatccgaggagtgtccgtgcttcata 22947848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 38078644 - 38078616
Alignment:
Q  61 aacaccaggacacgcctaatccgaggagt 89  Q
    |||||||||||||||||||||||||||||    
T  38078644 aacaccaggacacgcctaatccgaggagt 38078616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 42359431 - 42359391
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||| |||||||||||||||||||||||||  ||||||||    
T  42359431 acaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 36450736 - 36450695
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  36450736 acaccaggacacgcctaatccgaggagtgtctgtgcttcata 36450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 16641953 - 16641910
Alignment:
Q  60 taacaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||    
T  16641953 taacaccgggacacacctaatccgaggagtgtctgtgcttcata 16641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 25566913 - 25566948
Alignment:
Q  68 ggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||||| |||||||||    
T  25566913 ggacacgcctaatccgaggagtgtctgtgcttcata 25566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 29447081 - 29447039
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcataa 104  Q
    ||||||||||||||||||||| |||||||||  ||||||||||    
T  29447081 acaccaggacacgcctaatcctaggagtgtccgtgcttcataa 29447039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 8343044 - 8343085
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| ||||||||||||||||| |||||||| |||||||||    
T  8343044 acaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 8343404 - 8343445
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| ||||||||||||||||| |||||||| |||||||||    
T  8343404 acaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 11833935 - 11833968
Alignment:
Q  70 acacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||| |||||||||    
T  11833935 acacgcctaatccgaggagtgtctgtgcttcata 11833968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 13436952 - 13436911
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| ||||||||||||||| |||||||||| |||||||||    
T  13436952 acaccgggacacgcctaatccaaggagtgtctgtgcttcata 13436911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 44067604 - 44067644
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  44067604 acaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 17425389 - 17425348
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  17425389 acacaaggacacgcctaatccgaggagtgtctgtgcttcata 17425348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 28964224 - 28964189
Alignment:
Q  68 ggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28964224 ggacacgcctaatccgaggagtgtccatgcttcata 28964189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 3947743 - 3947701
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcataa 104  Q
    |||||||||||| ||||||||||||||||||  ||||||||||    
T  3947743 acaccaggacacacctaatccgaggagtgtccgtgcttcataa 3947701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 16073478 - 16073512
Alignment:
Q  69 gacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||| ||||||||||    
T  16073478 gacacgcctaatccgaggagtgtccatgcttcata 16073512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 21945588 - 21945618
Alignment:
Q  70 acacgcctaatccgaggagtgtctatgcttc 100  Q
    |||||||||||||||||||||||||||||||    
T  21945588 acacgcctaatccgaggagtgtctatgcttc 21945618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 17876243 - 17876284
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||| |||||||| |||||||||| |||||||||    
T  17876243 acaccaggacacacctaatccaaggagtgtctgtgcttcata 17876284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 18513217 - 18513176
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||| ||||||||||  |||||||||    
T  18513217 acaccaggacacgcctaatctgaggagtgtccgtgcttcata 18513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20633512 - 20633545
Alignment:
Q  1 aattcagtgtaattacaagtgtcgtgtcggtgtc 34  Q
    |||||| |||||||||||||||||||||||||||    
T  20633512 aattcaatgtaattacaagtgtcgtgtcggtgtc 20633545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 23292968 - 23292927
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  23292968 acaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 47264074 - 47264115
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||||||||||| ||| |||| |||||||||    
T  47264074 acaccaggacacgcctaatccgaagagcgtctgtgcttcata 47264115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 22440599 - 22440559
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    |||| ||||||||||||||||||||||||||  ||||||||    
T  22440599 acactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 42640602 - 42640642
Alignment:
Q  63 caccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||||||||||||||| ||  |||||||||    
T  42640602 caccaggacacgcctaatccgaggagtttccgtgcttcata 42640642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 40993317 - 40993276
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  40993317 acaccgggacacgcctaatccgaggagtgtccatgcttcata 40993276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 11252061 - 11252094
Alignment:
Q  70 acacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||| |||||||||    
T  11252061 acacgcctaatccgaggagtgtctgtgcttcata 11252094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 20503542 - 20503583
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  20503542 acaccgggacacgcctaatccgaggagtgtccgtgcttcata 20503583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 91
Target Start/End: Original strand, 25775584 - 25775613
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgt 91  Q
    ||||||||||||||||||||||||||||||    
T  25775584 acaccaggacacgcctaatccgaggagtgt 25775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 28812607 - 28812644
Alignment:
Q  66 caggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  28812607 caggacacgcctaatccgaggagtgtctgtgcctcata 28812644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 34185094 - 34185053
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  34185094 acaccgggacacgcctaatccgaggagtgtccgtgcttcata 34185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35994767 - 35994738
Alignment:
Q  1 aattcagtgtaattacaagtgtcgtgtcgg 30  Q
    ||||||||||||||||||||||||||||||    
T  35994767 aattcagtgtaattacaagtgtcgtgtcgg 35994738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 3730149 - 3730109
Alignment:
Q  63 caccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  3730149 caccgggacacacctaatccgaggagtgtccatgcttcata 3730109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 24205023 - 24204983
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  24205023 acaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 9911543 - 9911483
Alignment:
Q  44 acaagtgtcggtgtcttaaca-ccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||| |  || |||||||||||||||||||||||||||  ||||||||||    
T  9911543 acaagtgtcggtgtcgtgtcaaccaggacacgcctaatccgaggagtgttcatgcttcata 9911483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 17341661 - 17341621
Alignment:
Q  64 accaggacacgcctaatccgaggagtgtctatgcttcataa 104  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  17341661 accaggacacgcctaatccgaggagtgtttgtgcttcataa 17341621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 5732510 - 5732475
Alignment:
Q  68 ggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5732510 ggacacgcctaatccgaggagtgtccatgcttcata 5732475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 3209476 - 3209517
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||| | |||||||||    
T  3209476 acacccggacacgcctaatccgaggagtgtttgtgcttcata 3209517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 4878023 - 4878060
Alignment:
Q  66 caggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||||||  |||||||||    
T  4878023 caggacacgcctaatccgaggagtgtccgtgcttcata 4878060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 26178660 - 26178620
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||| |||||||||||||| ||||||||||| ||||||||    
T  26178660 acaccgggacacgcctaatcggaggagtgtctgtgcttcat 26178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 19942342 - 19942382
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  19942342 acaccgggacacgcctaatccgaggagtgtccatgcttcat 19942382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 19536397 - 19536362
Alignment:
Q  68 ggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||||||||||||| ||||||||||    
T  19536397 ggacacgcctaatccgaggagtgtccatgcttcata 19536362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 10535727 - 10535698
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgt 91  Q
    ||||||||||||||||||||||||||||||    
T  10535727 acaccaggacacgcctaatccgaggagtgt 10535698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 37419831 - 37419872
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  37419831 acaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 2438701 - 2438661
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||| |||||||||||||||||||||||||  ||||||||    
T  2438701 acaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 22084797 - 22084757
Alignment:
Q  63 caccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||| ||||||||||||||||| |||||||| |||||||||    
T  22084797 caccgggacacgcctaatccgatgagtgtctgtgcttcata 22084757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 51899 - 51942
Alignment:
Q  61 aacaccaggacacgcctaatccgaggagtgtctatgcttcataa 104  Q
    |||||| |||||||||||||||||||| |||| |||||||||||    
T  51899 aacaccgggacacgcctaatccgaggaatgtccatgcttcataa 51942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 188455 - 188507
Alignment:
Q  44 acaagtgtcggtgtctta----acaccaggacacgcctaatccgaggagtgtc 92  Q
    ||||||||||||||| ||    |||||||||||||||||||||||||||||||    
T  188455 acaagtgtcggtgtcgtatccgacaccaggacacgcctaatccgaggagtgtc 188507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 14873598 - 14873640
Alignment:
Q  61 aacaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||| |||||||||||||||||||||||||  |||||||||    
T  14873598 aacaccgggacacgcctaatccgaggagtgtccgtgcttcata 14873640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 10298633 - 10298674
Alignment:
Q  68 ggacacgcctaatccgaggagtgtctatgcttcataagagta 109  Q
    |||||||||||||||||||||||||  ||||||||| |||||    
T  10298633 ggacacgcctaatccgaggagtgtccgtgcttcataggagta 10298674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 15086563 - 15086596
Alignment:
Q  70 acacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||| |||||||||    
T  15086563 acacgcctaatccgaggagtgtctttgcttcata 15086596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 27932312 - 27932353
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  27932312 acaccaggacacgcctaattcgaggagtgtttgtgcttcata 27932353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 28588656 - 28588615
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||| |||||||| ||||||| ||||||||||    
T  28588656 acaccaggacacgcttaatccgaagagtgtccatgcttcata 28588615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 38464355 - 38464314
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||| ||||||||||||||||||| |||||||||    
T  38464355 acaccgggacacacctaatccgaggagtgtctgtgcttcata 38464314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 42893437 - 42893478
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||  |||||||||| ||||||||||    
T  42893437 acaccaggacacgcctaatatgaggagtgtccatgcttcata 42893478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 43001881 - 43001922
Alignment:
Q  61 aacaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    |||||| |||||||||||||||||||||||||  ||||||||    
T  43001881 aacacctggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 1433536 - 1433577
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||| |||||||||||||||||  |||||||||    
T  1433536 acaccaggacacgtctaatccgaggagtgtccgtgcttcata 1433577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 5409813 - 5409772
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  5409813 acaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 11272566 - 11272529
Alignment:
Q  68 ggacacgcctaatccgaggagtgtctatgcttcataag 105  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  11272566 ggacacgcctaatccgaggagtatctgtgcttcataag 11272529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 21880229 - 21880270
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  21880229 acaccaggacacgcctaatccgagaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 29763167 - 29763130
Alignment:
Q  66 caggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||||||||||||||||||||||||||  |||||||||    
T  29763167 caggacacgcctaatccgaggagtgtccgtgcttcata 29763130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 35862028 - 35862069
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcata 103  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  35862028 acacgaggacacgcctaatccgaggagtgtccgtgcttcata 35862069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 23128636 - 23128604
Alignment:
Q  71 cacgcctaatccgaggagtgtctatgcttcata 103  Q
    ||||||||||||||||||||||| |||||||||    
T  23128636 cacgcctaatccgaggagtgtctgtgcttcata 23128604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 225239 - 225199
Alignment:
Q  62 acaccaggacacgcctaatccgaggagtgtctatgcttcat 102  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  225239 acaccaggacacgcctaattcgaggagtgtccgtgcttcat 225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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