View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_high_13 (Length: 313)
Name: NF9563_high_13
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 29761847 - 29761555
Alignment:
| Q |
21 |
aaaatatgagacaaggtcacaaagttaaccatcattcctaattgacaaaatgaagagtgtatctaggtgagagtttatgataaagcagaacactaaaaat |
120 |
Q |
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| T |
29761847 |
aaaatatgagacaaggtcacaaagttaaccatcattcctaattgataaaatgaagagtgtatctaggtgagagtttatgataaagcataacactaataat |
29761748 |
T |
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| Q |
121 |
ccactatgtgaaatatcagatagagttgtggaaaactagacgcatagcagttgaaataagtcaattatacatagaaaaatacatgttaaatacacatgaa |
220 |
Q |
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| T |
29761747 |
ccaccatgtgaaatatcagatagagttgtggaaaactatacgcatagcagttgaaataagtcaattatacatagaaaaatacatgttaaatacacataaa |
29761648 |
T |
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| Q |
221 |
aagggaaacagatgcaaagaatagaatgccctggaatttgaaaggtttgcatatcacggtgaatgtaggatcaatattcacgaactcttcggt |
313 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29761647 |
aagggaaatggatgcaaagaatagaatgccctgaaatttgaaaggtttgcatatcacggtgaatgtaggatcaatattcacgaactcttcggt |
29761555 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 7278336 - 7278308
Alignment:
| Q |
161 |
cgcatagcagttgaaataagtcaattata |
189 |
Q |
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| T |
7278336 |
cgcatagcagttgaaataagtcaattata |
7278308 |
T |
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