View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_high_16 (Length: 251)
Name: NF9563_high_16
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 53489098 - 53488916
Alignment:
| Q |
1 |
aattttaaaagatttgggcaaatttcaaattttaaggaagttgagggatcaattttaaatttttgaaaatatgtagggaccaatccttaaatttgataaa |
100 |
Q |
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| T |
53489098 |
aattttaaaagatttgggcaaatttcaaattttaaggaagttgagggatcaattttaaatttttgaaaatatgtagggaccaatccttaaatttgataaa |
53488999 |
T |
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| Q |
101 |
taaacagagataaatatacaaaatttgaaacacataggaactatttgtgtacacaatatgaacaaattatatggaccaattgg |
183 |
Q |
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| T |
53488998 |
taaacagagataaatatacaaaatttgaaacacataggaactatttgtgtacacaatatgaacaaattatatggaccaattgg |
53488916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 53488891 - 53488835
Alignment:
| Q |
181 |
tggtattttaaattctctaaatttacatgatctcataatcctcttgatcaacttgtc |
237 |
Q |
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| T |
53488891 |
tggtattttaaattctctaaatttacatgatctcataatcctcttgatcaacttgtc |
53488835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6865708 - 6865764
Alignment:
| Q |
1 |
aattttaaaagatttggg-caaatttcaaattttaaggaagttgagggatcaatttt |
56 |
Q |
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| T |
6865708 |
aattttaaaagatttgggccaaatttgaaattttaaaaaagttgatggaccaatttt |
6865764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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