View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_high_20 (Length: 232)
Name: NF9563_high_20
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2272892 - 2272675
Alignment:
| Q |
1 |
accacattgatcaattaacacagtgaagcaaaatatgggaagcaatacatggaacaaaa---caatgtccatttggaggaaataaataatgttgcagtga |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2272892 |
accacattgatcaattaacacagtgaagcaaaatatgggaagcaatacatggaacaaaaaaacaatgtccatttggaggaaataaataatgttgcagtga |
2272793 |
T |
|
| Q |
98 |
agcacacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2272792 |
agcacacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctg |
2272693 |
T |
|
| Q |
198 |
tccttaaacattattcat |
215 |
Q |
| |
|
||||||| |||||||||| |
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|
| T |
2272692 |
tccttaagcattattcat |
2272675 |
T |
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