View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_high_4 (Length: 400)
Name: NF9563_high_4
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 32352045 - 32351667
Alignment:
| Q |
17 |
agtacctttagacagacttggaaaggtctatgccctagttatgtaatcttgtttgtatgtatcttttgatcattttctgattcc---tttatatgtaatg |
113 |
Q |
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| T |
32352045 |
agtacctttagacagacttggaaaggtctatgcccttgttatgtaatcttgtttgtatgtatcttttgatcattttctgattcctaatttatatgtaatg |
32351946 |
T |
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| Q |
114 |
aatggtgaatgaaataaaacaa-ggcaccaatttcactaactttttatttgttaaggaggacctcccctcgaagaagaatgttttctatcnnnnnnnnnn |
212 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32351945 |
aatggtgaatgaaataaaacaagggcaacaatttcactaactttttatttgttaaggaggacctcccctcgaagaagaatattttctatctttttacttt |
32351846 |
T |
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| Q |
213 |
nnnaatttgtggaagatagtcaagttatatgtttatggtttgaaaaatgttgggtcacactttctaacacactcttttaacaaaatttataatgattata |
312 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
32351845 |
tttaatttgtggaagatagtcgcgttacatgtttatggtttgaaaaatattgggtcacactctctaacacgctcttttaacaaaatttataatgattata |
32351746 |
T |
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| Q |
313 |
attgtttgatgataaatannnnnnnnattatcgagctccaaaatatcagattactattagggtcgcatattagtataat |
391 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32351745 |
attgtttgatgataaatatttttttaaatatcgagctccaaaatatcagattactattagggtcgcatattagtataat |
32351667 |
T |
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