View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_high_7 (Length: 356)
Name: NF9563_high_7
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 43560761 - 43561100
Alignment:
| Q |
1 |
tctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560761 |
tctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaag |
43560860 |
T |
|
| Q |
101 |
ttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaaggctctctctaaagactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560861 |
ttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaaggctctctctaaagactt |
43560960 |
T |
|
| Q |
201 |
gttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttcggatatttctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560961 |
gttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttcggatatttctgt |
43561060 |
T |
|
| Q |
301 |
caagagtttttcactatactcgagttgctcgacaaatatc |
340 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
43561061 |
caagagtttttcactatactcgagttgctcaacaaatatc |
43561100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 17730399 - 17730060
Alignment:
| Q |
1 |
tctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
17730399 |
tctaccctatattgtatctttttcgcgaataatggtaggagacaaaatattgaactctaaagaagccagtttggctctggcctttagagcttccttcaag |
17730300 |
T |
|
| Q |
101 |
ttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaaggctctctctaaagactt |
200 |
Q |
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|| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |
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| T |
17730299 |
tttgagcgaacctccataagctcgtcatcgatatttgtaagctcgtttttcaattcttgtttatgcatggccatgtgatcaaggtgctctctaaagactt |
17730200 |
T |
|
| Q |
201 |
gttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttcggatatttctgt |
300 |
Q |
| |
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||||||||||||||||||||| ||||||| | ||||||||||||||| || |||||||| |||||| || ||| |||||||||||| |||||||| || |
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| T |
17730199 |
gttcagatccctccacagaaccattccattgagccagtattcctctttgctccgcaagaacctgttgttctttaaatcgaatatcttcagatatttccgt |
17730100 |
T |
|
| Q |
301 |
caagagtttttcactatactcgagttgctcgacaaatatc |
340 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
17730099 |
caagagttttttactatactcgagttgctcgacaaatatc |
17730060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 43570053 - 43570167
Alignment:
| Q |
10 |
tattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaagttcgagcga |
109 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
43570053 |
tattgtatctttttcacgaataatgctaggagaaaaaatattgaactctaaagaagccagtttggctctggcctttagagcatctttcaacttcgagcga |
43570152 |
T |
|
| Q |
110 |
acctccataagctcg |
124 |
Q |
| |
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||||||||||||||| |
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| T |
43570153 |
acctccataagctcg |
43570167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 43569243 - 43569321
Alignment:
| Q |
262 |
ttgttgtactctaattcgaatatcttcggatatttctgtcaagagtttttcactatactcgagttgctcgacaaatatc |
340 |
Q |
| |
|
||||||| ||||| |||||||||| ||| ||||||| |||| |||||| |||||||||||||||||||||||||||||| |
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| T |
43569243 |
ttgttgttctctagttcgaatatcatcgaatatttccgtcacgagtttctcactatactcgagttgctcgacaaatatc |
43569321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 340
Target Start/End: Original strand, 1601625 - 1601771
Alignment:
| Q |
194 |
aagacttgttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttcggata |
293 |
Q |
| |
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|||||||||||||||| ||| |||||| ||||||| | ||| ||||||||||| || ||||||||||||||| ||||| || ||||||| |||| || |
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| T |
1601625 |
aagacttgttcagatctttccgcagaaccattccattgagccaatattcctctttgctccgcaagaacttgttgttctctagtttgaatatcatcggtta |
1601724 |
T |
|
| Q |
294 |
tttctgtcaagagtttttcactatactcgagttgctcgacaaatatc |
340 |
Q |
| |
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||| ||||||| ||| |||||| |||||| |||||||||||||||| |
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| T |
1601725 |
tttacgtcaagaatttctcactacactcgatttgctcgacaaatatc |
1601771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 340
Target Start/End: Complemental strand, 1622060 - 1621886
Alignment:
| Q |
166 |
catggccaagtgctcaaggctctctctaaagacttgttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgt |
265 |
Q |
| |
|
|||||||||||| |||||| | ||| || |||||||||||||| ||| ||||| || |||| | ||| ||||||||| | || |||||||| ||| |
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| T |
1622060 |
catggccaagtgttcaaggtgttatctcaatacttgttcagatccatccgtagaaccatttcattgagccaatattcctctatgctccgcaagaacctgt |
1621961 |
T |
|
| Q |
266 |
tgtactctaattcgaatatcttcggatatttctgtcaagagtttttcactatactcgagttgctcgacaaatatc |
340 |
Q |
| |
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||| ||||| || |||||| || |||||||| ||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
1621960 |
tgttctctagtttaaatatcatcagatatttccgtcaagagtttctcactacactcgagttgctcgacaaatatc |
1621886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 157 - 340
Target Start/End: Complemental strand, 1601591 - 1601408
Alignment:
| Q |
157 |
ttgtttatgcatggccaagtgctcaaggctctctctaaagacttgttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgca |
256 |
Q |
| |
|
|||||| | ||||||||||| |||||| || ||| ||||||||||||||||||||| ||||| || ||| | || |||||||||| | || ||| |
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|
| T |
1601591 |
ttgtttctacatggccaagtattcaaggtgctatctcaagacttgttcagatccctccgtagaaccatttcatcgagcccgtattcctctatgctccgca |
1601492 |
T |
|
| Q |
257 |
agaacttgttgtactctaattcgaatatcttcggatatttctgtcaagagtttttcactatactcgagttgctcgacaaatatc |
340 |
Q |
| |
|
|||||||||||| ||||| || |||||| || |||||||| | |||||||| |||||| ||||||||||||| ||||||||| |
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|
| T |
1601491 |
agaacttgttgttctctagtttaaatatcatcagatatttccattaagagtttctcactacactcgagttgctccacaaatatc |
1601408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 1622103 - 1622206
Alignment:
| Q |
194 |
aagacttgttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttcggata |
293 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||| | ||||||||||||||| || ||||||||||||||| ||||| || ||||||| |||| || |
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| T |
1622103 |
aagacttgttcagatccttccgcagaaccattccattgagccagtattcctctttgctccgcaagaacttgttgttctctagtttgaatatcatcggtta |
1622202 |
T |
|
| Q |
294 |
tttc |
297 |
Q |
| |
|
|||| |
|
|
| T |
1622203 |
tttc |
1622206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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