View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9563_low_12 (Length: 380)
Name: NF9563_low_12
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 51967841 - 51967487
Alignment:
| Q |
1 |
aaccatgctacccttgtttgccctgtctgcaactccacatggaaagacgttcctcttctagcggcgcacaagaatctcgcttcttctcaacaaattccca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
51967841 |
aaccatgctacccttgtttgccctgtctgcaacgccacatggaaagacgttcctcttctagcggcgcacaagaatcttgcttcttcacaacaaattccca |
51967742 |
T |
|
| Q |
101 |
atgcaattccaaaccacaaaatacctacagtaaatccctctcctgttatcagaaccaagaacgtggatcactctcaacaacagcaacaaacaaagccttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51967741 |
atgcaattccaaaccacaaaatacctacagtaaatccctctcctgttatcagaaccaagaacgtggatcactctcaacaacagcaacaaacaaagccttc |
51967642 |
T |
|
| Q |
201 |
tgaatcaataagatcctacgacgatgatgagcctctcctcctttctccaacttctggtggtggaaggattaacactattcccgaagcagatgaaaatgca |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51967641 |
tgaatcaacaagatcctacgacgatgatgagcctctcctcctttctccaacttctggtggtggaaggattaacactattcccgaagcagatgaaaatgca |
51967542 |
T |
|
| Q |
301 |
gaggaagaagatgatgacaactgcgagtttcaaggatttttcgtaaacaccaaac |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51967541 |
gaggaagaagatgatgacaactgcgagtttcaaggatttttcgtaaacactaaac |
51967487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University