View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_14 (Length: 370)
Name: NF9563_low_14
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 2089701 - 2090043
Alignment:
| Q |
17 |
agaaatatagaagatttctaaacttgaaaaatgcaactccaccataagagttaaaggacaagagttcgccattggtattaagaatcaacaacttcctatt |
116 |
Q |
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| T |
2089701 |
agaaatatagaaggtttctaaacttgaaaaatgcaactccaccataagagttaaaggacaagaggtcgccattggtattaagaatcaacaacttcctatt |
2089800 |
T |
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| Q |
117 |
cacttttcgatgaattgtgtgccatgtataagagctaacacccattgtaacacattcaacgagttcaaaacaaacaaaatttacacctctaaatgagacc |
216 |
Q |
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| T |
2089801 |
cacttttcgatgaattgtgtgccatgtataagagctaacacccattgtaacacattcaacgagttcaaaacaaacaaaatttacacctctaaatgagacc |
2089900 |
T |
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| Q |
217 |
aataagatcttgccatcttttagatttatctccctttgacaattatcaaaaacacaatcaggatgaagtgttattatctcagcttgattcgaggcattct |
316 |
Q |
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| T |
2089901 |
aataagatcttgccatcttttagatttatctccctttgacaattatcaaaaacacaatcaggatgaagtgttattatctcagcttgattcgaggcattct |
2090000 |
T |
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| Q |
317 |
cttgaggatcaactttaattttcaataaatattgtcctgaaca |
359 |
Q |
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| T |
2090001 |
cttgaggatcaactttaattttcaataaatattgtcctgaaca |
2090043 |
T |
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Back To:
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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 2879380 - 2879303
Alignment:
| Q |
270 |
acaatcaggatgaagtgttattatctcagcttgattcgaggcattctcttgaggatcaactttaattttcaataaata |
347 |
Q |
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| T |
2879380 |
acaaccaggatgtagtgttattacctcagcttgatccgaaacattctcctgaggatcaactttaattttcactaaata |
2879303 |
T |
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