View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_21 (Length: 342)
Name: NF9563_low_21
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 1097587 - 1097913
Alignment:
| Q |
1 |
cataaattcgaaaattaatatcatcaaatttaccatgaagtttagaaaaatataatcagacataatcatttcaaataagttagtaccggaaatattgatt |
100 |
Q |
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| T |
1097587 |
cataaattcgaaaattaatatcatcaaatttaccatgaagtttagaaaaatataatcagacataatcatttcaaataagttagtaccggaaatattgatt |
1097686 |
T |
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| Q |
101 |
ctgcaacacatgtataagcttctgtggctgcataaaagaaaataagttcaaatcatcagcaattcatatctttgtcgcacacgaaagtggattgtcgcat |
200 |
Q |
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| T |
1097687 |
ctgcaacacatgtataagcttctgtggctgcataaaaaaaaataagttcaaatcatcagcaattcatatctttgtcgcacacgaaagtggattgtcgcat |
1097786 |
T |
|
| Q |
201 |
gtgatggacatttacacatgaagtgtttcttgcttgtacatgcatacattgcttcctattagtttacacaatgcgcaaattcacataaacagccaaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
1097787 |
gtgatggacatttacacatgaagtgtttcttgcttgtacatgcatacattgcttccaattaatttacacaatgcacaaattcacataaacaaccaaagaa |
1097886 |
T |
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| Q |
301 |
gtccatacatttcatgattgaacaatc |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
1097887 |
gtccatacatttcatgattgaacaatc |
1097913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 1064463 - 1064137
Alignment:
| Q |
1 |
cataaattcgaaaattaatatcatcaaatttaccatgaagtttagaaaaatataatcagacataatcatttcaaataagttagtaccggaaatattgatt |
100 |
Q |
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|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
1064463 |
cataaattcgaaaattaatattatcaaatttaccacgaagtttagaaaaatataatcagacgtaatcatttcaaataaattagtaccggaaatattgatt |
1064364 |
T |
|
| Q |
101 |
ctgcaacacatgtataagcttctgtggctgcataaaagaaaataagttcaaatcatcagcaattcatatctttgtcgcacacgaaagtggattgtcgcat |
200 |
Q |
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||||||| || ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1064363 |
ctgcaacgcacgtataagcttctggggctgcataacagaaaataagttcaaatcatcagcaattcatatctttgtcgcacacgaaagtagattgtcgcat |
1064264 |
T |
|
| Q |
201 |
gtgatggacatttacacatgaagtgtttcttgcttgtacatgcatacattgcttcctattagtttacacaatgcgcaaattcacataaacagccaaagaa |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
1064263 |
atgatggacatttacacaggaagtgtttcttgcttgtacatgcacacaatgcttcctattagtttacacaatgaacaaattcacataaacaaccaaagaa |
1064164 |
T |
|
| Q |
301 |
gtccatacatttcatgattgaacaatc |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
1064163 |
gtccatacatttcatgattgaacaatc |
1064137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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