View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_24 (Length: 325)
Name: NF9563_low_24
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 48488024 - 48487697
Alignment:
| Q |
17 |
aaatatttccctcgcaaatttcttcaattttaagaatttcagcttctccctccttttcttttcttttctaacacaaaaacatcaattaaatcattaaaca |
116 |
Q |
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| T |
48488024 |
aaatatttccctcgcaaatttcttcaattttaagaatttcagcttctccctccttttcttttcttttctaacacaaaaacatcaattaaatcattaaaca |
48487925 |
T |
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| Q |
117 |
ccattgtttgttcctccttctgttttactttactttcatataaacatagtagatttatttattcattta--------------ttttctctccttcattg |
202 |
Q |
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| T |
48487924 |
ccattgtttgttcctccttctgttttactttaccttcatataaacatagtagatttatttattcatttattttatttcatttattttctctccttcattg |
48487825 |
T |
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| Q |
203 |
ttcgatttgctgatttgatttttggtggatctgaaataaattaatta-----ttgtgtgttgatcataatcacaaaaaagatgaaatctggaattcagaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487824 |
ttcgatttgctgatttgatttttggtggatctgaaataaatgaattagggttttgtgtgttgatcataatcacaaaaaagatgaaatctggaattcagaa |
48487725 |
T |
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| Q |
298 |
cctgaagcgatgtagtaagctagaagaa |
325 |
Q |
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| T |
48487724 |
tctgaagcgatgtagtaagctagaagaa |
48487697 |
T |
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