View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_27 (Length: 323)
Name: NF9563_low_27
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 8356496 - 8356335
Alignment:
| Q |
18 |
aaggatatattattccatacttgcaggtagctaatagcatagtgacaatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagt |
117 |
Q |
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| T |
8356496 |
aaggatatattattccatacttgcaggtagctaatagcatagtgacaatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagt |
8356397 |
T |
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| Q |
118 |
gagttttgttataaaaccaacgtataacatcattcactgttacattacttatagctgttgag |
179 |
Q |
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| T |
8356396 |
gagttttgttataaaaccaacgtataacatcattcattgttacattacttatagctgttgag |
8356335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 181 - 304
Target Start/End: Complemental strand, 8356207 - 8356084
Alignment:
| Q |
181 |
tgattgtacgggtcctccagccttgttcactagtatactgttttcttctatgttgggggttgagaacttatatagggtgatgatgataaatttgagatta |
280 |
Q |
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| T |
8356207 |
tgattgtacggttcctccagccttgttcactagtatactgttttcttctatgttgggggttgagaacttatatagggtgatgatgataaatttgagatta |
8356108 |
T |
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| Q |
281 |
aacaaggtaacattttttccactg |
304 |
Q |
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| T |
8356107 |
aacaaggtcacattttttccactg |
8356084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 8433316 - 8433167
Alignment:
| Q |
58 |
agtgacaatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagtgagttttgttataaaaccaacgtataacatcattcactgt |
157 |
Q |
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| T |
8433316 |
agtgacaatttgaaaacataaaagaagtcccacatcaaaactttgtgaaatatagtgagtgagttttgttataaaaccaacgtatggtttcattcattgt |
8433217 |
T |
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| Q |
158 |
tacattacttatagctgttgagctgattgtacgggtcctccagccttgttca |
209 |
Q |
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| T |
8433216 |
tacattgct--tagctgttgagttgattgtaagggtcctccagctttgttca |
8433167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 8362292 - 8362239
Alignment:
| Q |
64 |
aatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagt |
117 |
Q |
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| T |
8362292 |
aatttgaaaacaaaaaactagtcccacatcggaactttttgaaatatagtgagt |
8362239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 8419380 - 8419317
Alignment:
| Q |
78 |
aaacaagtcccacataggaactttgtgaaatatagt--gagtgagttttgttataaaaccaacg |
139 |
Q |
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| T |
8419380 |
aaacaagccccacatcggaactttgtaaaatatagtgagagtaagttttgttataaaaccaacg |
8419317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 8406402 - 8406351
Alignment:
| Q |
64 |
aatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtga |
115 |
Q |
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| T |
8406402 |
aatttcaaaacaaaaaataagtcccacattggaactttatgaaatatagtga |
8406351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 8342961 - 8342901
Alignment:
| Q |
78 |
aaacaagtcccacataggaactttgtgaaatatagt--gagtgagttttgttataaaacca |
136 |
Q |
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| T |
8342961 |
aaacaagtcccacatcggaactttgtgaaatttagtgagagtaagttttgctataaaacca |
8342901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 8415771 - 8415718
Alignment:
| Q |
64 |
aatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagt |
117 |
Q |
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| T |
8415771 |
aatttcaaaacaaaaaataagccccacatcggaactttatgaaatatagtgagt |
8415718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 8407589 - 8407533
Alignment:
| Q |
65 |
atttgaaaacaaaaaac-aagtcccacataggaactttgtgaaatatagtgagtgag |
120 |
Q |
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| T |
8407589 |
atttgaaaacaaaaaaataagtcccacatcggaactttatgaaatgtagtcagtgag |
8407533 |
T |
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