View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_3 (Length: 434)
Name: NF9563_low_3
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 50 - 325
Target Start/End: Original strand, 34289250 - 34289525
Alignment:
| Q |
50 |
ttagtattacagaccttaattataacactaacctaattcaacaccgagtttcgaaacgacattttctccattcgcaagatccgaacttaagactttttat |
149 |
Q |
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| T |
34289250 |
ttagtgttacagaccttaattataacactaacttaattcaacacagactctccaaacgacattttctccattcgcaagattcgaacttaagactttttat |
34289349 |
T |
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| Q |
150 |
aagaaattcaagtttgttacactcaaaccaatgtaatgttagcactttaatataattttttcttatataaaaatataaataccaatgcattaaattttag |
249 |
Q |
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| T |
34289350 |
aagaaatttaagtttgttacactcaaaccaatgtaatgttggcactttaatataattttttcttatataaaaatataaataccaatgcattaaattttag |
34289449 |
T |
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| Q |
250 |
caaaaatcaaatcgaggggtcatttgtattattgataaaacactaaaatcaattccaaataaaagtctttcacaag |
325 |
Q |
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| T |
34289450 |
caaaaatcaaatcgaggggtcatttgtattattgataaaacagtaaaatcaattccaaataaaagtcttacacaag |
34289525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 314
Target Start/End: Original strand, 34301716 - 34301900
Alignment:
| Q |
132 |
gaacttaagactttttataagaaattcaagtttgttacactcaaaccaatgtaatgttagcactttaatataattttttcttatataaaaatataaatac |
231 |
Q |
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| T |
34301716 |
gaacttaagacttttcttaagcgattcaagcttgttacacgcaaaccaatgcaatgttgccatttcactataattttt-cttatataaaaatataaatac |
34301814 |
T |
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| Q |
232 |
caatgcat---taaattttagcaaaaatcaaatcgaggggtcatttgtattattgataaaacactaaaatcaattccaaataaaag |
314 |
Q |
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| T |
34301815 |
gaatgcataaataaatcttagtaaaaatcaaattgaagggtcgttagtttaattgataaaacactaaaatcaattccaaataaaag |
34301900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 34289591 - 34289634
Alignment:
| Q |
391 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacat |
434 |
Q |
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| T |
34289591 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacat |
34289634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 34301978 - 34302021
Alignment:
| Q |
391 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacat |
434 |
Q |
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| T |
34301978 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacat |
34302021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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