View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_30 (Length: 316)
Name: NF9563_low_30
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 13482321 - 13482021
Alignment:
| Q |
1 |
ttgcaaataagaaaaaag-cacaaatatttgctttctcttttatgtaggactcatgatcaaggcaacaattaaatattaaggaggatccacataaacnnn |
99 |
Q |
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| T |
13482321 |
ttgcaaataagaaaaaaaacacaaatatttgctttctcttttatgtaggactcataatcaaggcaacaattaaatattagggaggatccacataaacaaa |
13482222 |
T |
|
| Q |
100 |
nnnnnnntaaatattgtagggcactgcaaattaataggtactatatagcacactatggaatattgagttagagtaatattttagaaattagaaaattgat |
199 |
Q |
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| T |
13482221 |
aaataaataaatattgtagggcactgcaaattaataggtactatatagcacactatggaatattgagttagagtaatattttagaaattagaaaattgat |
13482122 |
T |
|
| Q |
200 |
tagcacattatatcaacaaaggagaatgat-ataattaagttatatgacagaacattgatatggtcttaattttcccatctgttacattacatatatgtg |
298 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13482121 |
tagcatattatatcaacaaaggagaatgataataattaagttatatgacaaaacattgatatggtcttaattttcccatctgttacattacatatatgtg |
13482022 |
T |
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| Q |
299 |
t |
299 |
Q |
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| T |
13482021 |
t |
13482021 |
T |
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