View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_37 (Length: 270)
Name: NF9563_low_37
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 16330075 - 16330313
Alignment:
| Q |
19 |
tagaattgcttttgtctcatagaatgaagtttaacttgaagttgaaatttagagtttttatctccaaacaaggtttttagccttaaatctgtagttcaac |
118 |
Q |
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| T |
16330075 |
tagagttgcttttgtctcatagaatgaagtttaacttgaagttgaaatttagagtttttgcctccaaacaaggtttttagccttaaatttgtagttcaac |
16330174 |
T |
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| Q |
119 |
ttatttttactcaagtgtatctaaacataaatcatgtatcattcaactcacttttagttgaaatcaatttagtcgtaatcaatttcgcttagaagcatgc |
218 |
Q |
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| T |
16330175 |
ttatttttactcaagtgtatc--aacataaatcatgtaacgttcaactcaattttagttgaaatcaatttagacggaatcaattttgcttagaggcaagc |
16330272 |
T |
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| Q |
219 |
acaaacta-cacacctttctgttactgttgttcttcctctc |
258 |
Q |
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| T |
16330273 |
acaaactaccacacctttcagttagtattgttcgtcctctc |
16330313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 43152426 - 43152376
Alignment:
| Q |
135 |
gtatctaaacataaatcatgtatcattcaactcacttttagttgaaatcaa |
185 |
Q |
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| T |
43152426 |
gtatccaaacataaatcacttttcattcaactcacttttaattgaaatcaa |
43152376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 27962216 - 27961986
Alignment:
| Q |
28 |
ttttgtctcatagaatgaagtttaacttgaagttgaaatttagagtttttatctccaaacaaggtttttagccttaaatctgtagttcaacttattttta |
127 |
Q |
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| T |
27962216 |
ttttgtctc-tagaatgaagtttaacttgaagttgaaatttattgtttttacctccaaatgtggttcttagccttaaatttatagttcaactaattttta |
27962118 |
T |
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| Q |
128 |
ctcaagtgtatctaaacataaatcatgtatcattcaactcacttttagttgaaatcaatttagtcgtaatcaa-tttcgcttagaagcatgcacaaacta |
226 |
Q |
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| T |
27962117 |
tacgaatgtatccaaacataaatcatctaacatttaactcacttttggttgaaatcaatttagtcgtaatcaattttcacttagaagtacccacaaacta |
27962018 |
T |
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| Q |
227 |
-cacacctttctgttactgttgttcttcctct |
257 |
Q |
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| T |
27962017 |
ccacacctttctgttcctgttgttcttcctct |
27961986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 25208718 - 25208770
Alignment:
| Q |
136 |
tatctaaacataaatcatgtatcattcaactcacttttagttgaaatcaattt |
188 |
Q |
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| T |
25208718 |
tatcgaaacataaatcattttacattcaactcacttttaattaaaatcaattt |
25208770 |
T |
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