View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_4 (Length: 422)
Name: NF9563_low_4
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 45283312 - 45283701
Alignment:
| Q |
19 |
tttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283312 |
tttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaag |
45283411 |
T |
|
| Q |
119 |
agccatcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283412 |
agccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggct |
45283511 |
T |
|
| Q |
219 |
gctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaa |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45283512 |
gctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaa |
45283611 |
T |
|
| Q |
319 |
gatttctttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283612 |
gatttctttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
45283701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 45271530 - 45271927
Alignment:
| Q |
11 |
atcatcagtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45271530 |
atcagcagtttggtcatgaacagcttcaatgttgttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcag |
45271629 |
T |
|
| Q |
111 |
tcattaagagccatcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttca |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45271630 |
tcatcaagagccatcttggcaccatttttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttca |
45271729 |
T |
|
| Q |
211 |
cggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacat |
310 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
45271730 |
cggctgctgctatgtatgccttagggtcagcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacat |
45271829 |
T |
|
| Q |
311 |
aattctaagatttctttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |
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| T |
45271830 |
aattctaagatttctttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataa |
45271927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 45275063 - 45275460
Alignment:
| Q |
11 |
atcatcagtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275063 |
atcagcagtttggtcatgaacagcttgaatgttgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcag |
45275162 |
T |
|
| Q |
111 |
tcattaagagccatcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttca |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
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|
| T |
45275163 |
tcatcaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttca |
45275262 |
T |
|
| Q |
211 |
cggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacat |
310 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
45275263 |
cggcggctgctatgtatgccttagggtcagcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacat |
45275362 |
T |
|
| Q |
311 |
aattctaagatttctttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
45275363 |
aattctaagatttctttgttgagtttgaacctcagggtctttaccatttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataa |
45275460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 45294699 - 45295089
Alignment:
| Q |
18 |
gtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294699 |
gtttggtcatgaacagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaa |
45294798 |
T |
|
| Q |
118 |
gagccatcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggc |
217 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | ||| |
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|
| T |
45294799 |
gagccatcttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggc |
45294898 |
T |
|
| Q |
218 |
tgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattcta |
317 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | | |
|
|
| T |
45294899 |
tgctatgtatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttga |
45294998 |
T |
|
| Q |
318 |
agatttctttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
408 |
Q |
| |
|
||| |||||||||||||| |||||| |||||||||||||||||| |||| ||| ||| || ||||||||||||||||||||||| |||| |
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|
| T |
45294999 |
agagatctttgttgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataa |
45295089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 45303659 - 45304049
Alignment:
| Q |
18 |
gtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303659 |
gtttggtcatgaacagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaa |
45303758 |
T |
|
| Q |
118 |
gagccatcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggc |
217 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | ||| |
|
|
| T |
45303759 |
gagccatcttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggc |
45303858 |
T |
|
| Q |
218 |
tgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattcta |
317 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | | |
|
|
| T |
45303859 |
tgctatgtatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttga |
45303958 |
T |
|
| Q |
318 |
agatttctttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
408 |
Q |
| |
|
||| |||||||||||||| |||||| |||||||||||||||||| |||| ||| ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
45303959 |
agagatctttgttgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataa |
45304049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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