View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9563_low_41 (Length: 250)

Name: NF9563_low_41
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9563_low_41
NF9563_low_41
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-237)||(16345-16581)
[»] chr2 (10 HSPs)
chr2 (1-237)||(20712506-20712742)
chr2 (78-187)||(20980542-20980651)
chr2 (97-214)||(20975515-20975632)
chr2 (88-212)||(21021267-21021392)
chr2 (97-194)||(25377031-25377128)
chr2 (89-195)||(25698456-25698562)
chr2 (140-187)||(18908832-18908879)
chr2 (140-187)||(18913580-18913627)
chr2 (140-187)||(18920788-18920835)
chr2 (93-123)||(1826329-1826359)
[»] chr8 (1 HSPs)
chr8 (142-195)||(29390288-29390341)
[»] chr7 (2 HSPs)
chr7 (140-187)||(19344598-19344645)
chr7 (140-189)||(36260253-36260302)
[»] chr4 (1 HSPs)
chr4 (140-189)||(35767018-35767067)


Alignment Details
Target: scaffold0097 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16581 - 16345
Alignment:
Q  1 atcatctccctcgatttggagatggagacatacacacaaatgttgctccctcaagattttgacgaagtgcatccacatatgccaatggtttgtgtgttga 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  16581 atcatctccctcgatttggggatggagacatacacacaaatgttgctccctcaggatttcgacgaagtgcatccacatatgccaatggtttgtgtgttga 16482  T
Q  101 tggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaattgctaaa 200  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16481 tggactgtctttgtttttctcaccattcggacggatacaattttgttatatggaagatgagggaatttgcagttgaagagtcttggattaaattgctaaa 16382  T
Q  201 gtttagctatcaacttgacttttatgtcggcgtgtct 237  Q
    ||||||||||||||||||||||| || || |||||||    
T  16381 gtttagctatcaacttgacttttctgccgccgtgtct 16345  T

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Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 20712742 - 20712506
Alignment:
Q  1 atcatctccctcgatttggagatggagacatacacacaaatgttgctccctcaagattttgacgaagtgcatccacatatgccaatggtttgtgtgttga 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  20712742 atcatctccctcgatttggggatggagacatacacacaaatgttgctccctcaggatttcgacgaagtgcatccacatatgccaatggtttgtgtgttga 20712643  T
Q  101 tggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaattgctaaa 200  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20712642 tggactgtctttgtttttctcaccattcggacggatacaattttgttatatggaagatgagggaatttgcagttgaagagtcttggattaaattgctaaa 20712543  T
Q  201 gtttagctatcaacttgacttttatgtcggcgtgtct 237  Q
    ||||||||||||||||||||||| || || |||||||    
T  20712542 gtttagctatcaacttgacttttctgccgccgtgtct 20712506  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 20980542 - 20980651
Alignment:
Q  78 tatgccaatggtttgtgtgttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaa 177  Q
    ||||||||| |||| |||||||||||| ||||||||||||| |||||||||  ||| | |  |||||||||||||||| ||||  ||||||  |||||||    
T  20980542 tatgccaattgtttctgtgttgatggattgtctttgtttttgtcattattccaacggaaatgattttgttatatggaaaatgacagaatttagagttgaa 20980641  T
Q  178 gaatcttgga 187  Q
    || |||||||    
T  20980642 gagtcttgga 20980651  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 20975515 - 20975632
Alignment:
Q  97 ttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaattgc 196  Q
    |||||| |||||||||||||| | ||||||||  | | | |  |||||||||||||| | ||||||||||||| ||||||||| ||||||||| |||||     
T  20975515 ttgatgaactgtctttgttttacacattattccaagggaaatcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgt 20975614  T
Q  197 taaagtttagctatcaac 214  Q
    | || ||||| |||||||    
T  20975615 ttaaatttaggtatcaac 20975632  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 21021392 - 21021267
Alignment:
Q  88 gtttgtgtgttgatggactgtcttt-gtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttgg 186  Q
    ||||| ||||||||||| ||||||| ||||| || |||||||  | ||||| ||||||  ||||||| |||||| |||||||  ||||||| | || |||    
T  21021392 gtttgcgtgttgatggaatgtcttttgttttacttattattcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatgg 21021293  T
Q  187 attaaattgctaaagtttagctatca 212  Q
    | ||||||||| ||||||||||||||    
T  21021292 actaaattgcttaagtttagctatca 21021267  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 25377031 - 25377128
Alignment:
Q  97 ttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaatt 194  Q
    |||| ||||||||||||||||| |||| ||| ||| ||| || ||||||||||||||| ||||| ||| |||| |||| |||| ||||||||| ||||    
T  25377031 ttgacggactgtctttgtttttgtcatgatttggaggaaaaccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaatt 25377128  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 25698456 - 25698562
Alignment:
Q  89 tttgtgtgttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggat 188  Q
    |||| ||||||||||  |||||||||||||||||||| ||      ||  ||||||||||||||| | ||||| ||||||| ||||||||| |||||||     
T  25698456 tttgcgtgttgatgggatgtctttgtttttctcattactcaaggttatctaattttgttatatggcaaatgagagaatttggagttgaagactcttggac 25698555  T
Q  189 taaattg 195  Q
    |||||||    
T  25698556 taaattg 25698562  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 18908879 - 18908832
Alignment:
Q  140 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 187  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  18908879 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 18908832  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 18913627 - 18913580
Alignment:
Q  140 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 187  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  18913627 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 18913580  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 18920835 - 18920788
Alignment:
Q  140 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 187  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  18920835 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 18920788  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 1826329 - 1826359
Alignment:
Q  93 tgtgttgatggactgtctttgtttttctcat 123  Q
    |||||||||||||||||||||||||||||||    
T  1826329 tgtgttgatggactgtctttgtttttctcat 1826359  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 29390288 - 29390341
Alignment:
Q  142 tttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaattg 195  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| | |||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaattg 29390341  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 19344645 - 19344598
Alignment:
Q  140 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 187  Q
    |||||||||||||| |||||| |||||||| ||||||| |||||||||    
T  19344645 attttgttatatggcagatgatggaatttggagttgaacaatcttgga 19344598  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 36260253 - 36260302
Alignment:
Q  140 attttgttatatggaagatgagggaatttgcagttgaagaatcttggatt 189  Q
    ||||||||||||||||||||   ||||||| ||||||||| |||||||||    
T  36260253 attttgttatatggaagatggaagaatttggagttgaagagtcttggatt 36260302  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 35767018 - 35767067
Alignment:
Q  140 attttgttatatggaagatgagggaatttgcagttgaagaatcttggatt 189  Q
    ||||||||||||||||||||   ||||||| ||||||||| |||||||||    
T  35767018 attttgttatatggaagatggaagaatttggagttgaagagtcttggatt 35767067  T

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