View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_42 (Length: 249)
Name: NF9563_low_42
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 43961883 - 43961670
Alignment:
| Q |
17 |
atgccaaatgtagagagaactttactctactgttgcatttttgtatacataacgcaacaaaatataatacataagatcctgcgatgatgttaacttcgaa |
116 |
Q |
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| T |
43961883 |
atgccaaatgtagagagaactttactctactgttgcatttttgtatacataccgcaacaaaatataatacataagatcctgcgatgatgttaacttcgaa |
43961784 |
T |
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| Q |
117 |
atttgcacgacaatataggcacaggtagcaatgctgaaacaatcacaaaagaccactaagaaattgtcaaaataaatcagtccttgagaatcctttaaat |
216 |
Q |
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| T |
43961783 |
atttgcacgacaatataggcacagggagcaatgctgaaacaatcacaaaagaccactaaaaaattgtcaaaataaatcagtccttgagaatcctttaaat |
43961684 |
T |
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| Q |
217 |
gatcataaagaaga |
230 |
Q |
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| T |
43961683 |
gatcataaagaaga |
43961670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 43955567 - 43955465
Alignment:
| Q |
110 |
cttcgaaatttgcacgacaatataggcacaggtagcaatgctgaaacaatcacaaaagaccactaagaaattgtcaaaataaatcagtccttgagaatcc |
209 |
Q |
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|||| ||| |||||| |||||||||||| | |||||||||||||||| || |||| ||||| |||||| || |||||||||||| ||||||| ||| |
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| T |
43955567 |
cttcaaaaattgcacaacaatataggcagatgtagcaatgctgaaacgat--aaaaataccacaaagaaa-tggaaaaataaatcagcacttgagattcc |
43955471 |
T |
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| Q |
210 |
tttaaa |
215 |
Q |
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|||||| |
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| T |
43955470 |
tttaaa |
43955465 |
T |
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