View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_45 (Length: 241)
Name: NF9563_low_45
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 53489101 - 53489324
Alignment:
| Q |
1 |
catttgatccactctcttttt-atatttaaattattatctcaagatttgtgaaatttataaaaacggtaaaataaataagctctatcttaatatttgatg |
99 |
Q |
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| T |
53489101 |
catttgatccactctcttttttatgtttaaattattatctcaagatttttaaaatttataaaaacggtccaataaataagctctatcttaatatt-gatg |
53489199 |
T |
|
| Q |
100 |
tgctagttgattccattatctaaacaaagaatttgaaaataaacattttgaaattaagaaacttacacaacatgtgcaggattccagagaaaagaatagg |
199 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53489200 |
tgctatttgattccattatccaaacaaagaatttgaaa-taaacattttgaaatttagaaacttacacaacatgtgcaggattccagagaaaagaatagg |
53489298 |
T |
|
| Q |
200 |
tatgaaaacttgtagttggatcaaac |
225 |
Q |
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||||||||||||||||||| |||||| |
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| T |
53489299 |
tatgaaaacttgtagttgggtcaaac |
53489324 |
T |
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