View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9563_low_49 (Length: 235)
Name: NF9563_low_49
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 40268126 - 40267941
Alignment:
| Q |
16 |
gcagagactaattagttaatagaactacaataaaaaacaagcatctatctcaagagtataaaaattatagcatttcaagagctaaattccaacttaaggc |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
40268126 |
gcagagactaattagttaatagaactataataaaaaacaagcatctatctcaagagcataaaaactatagcatttcaagagctaaattccaacttaatgc |
40268027 |
T |
|
| Q |
116 |
atcagattaattagttggaacaaactcaaattatctcattcaaacgctcaccagtcatggtcaattgaagtaccaccttgaatgag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40268026 |
atcagattaattagttggaacaaactcaaattatctcattcaaacgctcaccagtcatggtcaattgaagtaccaccttgaatgag |
40267941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University